Variant report
Variant | nsv7909 |
---|---|
Chromosome Location | chr6:63607324-63610123 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs573621828 | chr6:63607327-63607328 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs186453305 | chr6:63607332-63607333 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs12199023 | chr6:63607360-63607361 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
4 | rs564101659 | chr6:63607371-63607372 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs533199833 | chr6:63607384-63607385 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs551241004 | chr6:63607405-63607406 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs576216790 | chr6:63607474-63607475 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs543499095 | chr6:63607496-63607497 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs146380733 | chr6:63607503-63607504 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs547036542 | chr6:63607535-63607536 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs568493105 | chr6:63607552-63607553 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs535464899 | chr6:63607555-63607556 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs551299129 | chr6:63607556-63607557 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs569450031 | chr6:63607576-63607577 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs540029856 | chr6:63607580-63607581 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs12199137 | chr6:63607588-63607589 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
17 | rs117991672 | chr6:63607593-63607594 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs529066232 | chr6:63607673-63607674 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs547599530 | chr6:63607696-63607697 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs533614847 | chr6:63607702-63607703 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs375541110 | chr6:63607787-63607788 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs555023641 | chr6:63607796-63607797 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs76104717 | chr6:63607886-63607887 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs9360938 | chr6:63607922-63607923 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs556425263 | chr6:63607927-63607928 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs577819333 | chr6:63607929-63607930 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs545203336 | chr6:63607940-63607941 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs139259195 | chr6:63607941-63607942 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs527458611 | chr6:63607948-63607949 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs540763026 | chr6:63607964-63607965 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs533251910 | chr6:63607988-63607989 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs562152647 | chr6:63607996-63607997 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs149553608 | chr6:63608034-63608035 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs550655736 | chr6:63608045-63608046 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs190881994 | chr6:63608080-63608081 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs183341636 | chr6:63608091-63608092 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs551581873 | chr6:63608094-63608095 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs13196154 | chr6:63608186-63608187 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs144297893 | chr6:63608197-63608198 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs555088129 | chr6:63608209-63608210 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs567203067 | chr6:63608287-63608288 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs12200939 | chr6:63608387-63608388 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
43 | rs555851549 | chr6:63608407-63608408 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs35468721 | chr6:63608408-63608409 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
45 | rs375349057 | chr6:63608441-63608442 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs545001170 | chr6:63608487-63608488 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs73499390 | chr6:63608492-63608493 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
48 | rs571230024 | chr6:63608520-63608521 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs542841585 | chr6:63608542-63608543 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs148738243 | chr6:63608543-63608544 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Wilms tumour | 21544195 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Autism | 22495311 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Gastric cancer | 17908304 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 17603634 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Systemic lupus erythematosus | 17503323 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Cancer | 21637783 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Lung cancer | 18438408 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 21364760 | CNVD |
Acute lymphoblastic leukemia | 18458336 | CNVD |
Cancer | 20164920 | CNVD |
Prostate cancer | 16573809 | CNVD |
Ovarian cancer | 19835627 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Cancer | 21183584 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Breast cancer | 16272173 | CNVD |
Developmental delay | 21147756 | CNVD |
small cell lung cancer | 20016488 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:63607200-63610200 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |