Variant report

Variant	nsv7940
Chromosome Location	chr6:87562446-87586120
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:87569023..87569900-chr6:87646597..87647139,2	MCF-7	breast:
2	chr6:87491790..87492456-chr6:87566446..87567164,4	MCF-7	breast:
3	chr6:87570712..87571662-chr6:87646445..87647351,6	MCF-7	breast:
4	chr6:87565888..87566776-chr6:87646668..87647203,2	MCF-7	breast:
5	chr6:87566606..87567119-chr6:87739226..87739851,2	MCF-7	breast:
6	chr6:86463941..86466706-chr6:87565460..87567312,2	MCF-7	breast:
7	chr6:87570969..87571590-chr6:87646510..87647169,2	MCF-7	breast:
8	chr6:87569230..87570355-chr6:87738909..87740054,4	MCF-7	breast:
9	chr6:87569382..87569938-chr6:87739160..87740006,3	MCF-7	breast:
10	chr6:87569162..87570137-chr6:87646249..87647415,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168830	chromatin interactions

Extended variants
information (count: 604 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:604 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542629787	chr6:87562511-87562512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs139548431	chr6:87562625-87562626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531318085	chr6:87562650-87562651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs543156266	chr6:87562691-87562692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs537039252	chr6:87562708-87562709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs564735436	chr6:87562716-87562717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs188290289	chr6:87562718-87562719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs547338596	chr6:87562719-87562720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs550305050	chr6:87562749-87562750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs149696954	chr6:87562780-87562781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs180705672	chr6:87562798-87562799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567009991	chr6:87562846-87562847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145498013	chr6:87562857-87562858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538338643	chr6:87562862-87562863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs1321315	chr6:87562880-87562881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139122950	chr6:87562911-87562912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs571853347	chr6:87562922-87562923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs116264898	chr6:87562930-87562931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs566008112	chr6:87562933-87562934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs143980445	chr6:87562958-87562959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs184299213	chr6:87563028-87563029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561813581	chr6:87563057-87563058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs76070159	chr6:87563101-87563102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs575681187	chr6:87563104-87563105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543095176	chr6:87563112-87563113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368941363	chr6:87563129-87563130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372955442	chr6:87563145-87563146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs190020687	chr6:87563172-87563173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141422813	chr6:87563195-87563196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552773146	chr6:87563212-87563213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs572656662	chr6:87563270-87563271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs559343083	chr6:87563274-87563275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538566994	chr6:87563289-87563290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145136340	chr6:87563297-87563298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs558805682	chr6:87563307-87563308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs567641693	chr6:87563329-87563330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531772849	chr6:87563337-87563338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs151302105	chr6:87563341-87563342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544572671	chr6:87563411-87563412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs140531464	chr6:87563470-87563471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs538811582	chr6:87563480-87563481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs370003634	chr6:87563493-87563494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs72910588	chr6:87563586-87563587	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs374491268	chr6:87563594-87563595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs566184558	chr6:87563598-87563599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536951875	chr6:87563645-87563646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs181208491	chr6:87563660-87563661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs186011825	chr6:87563668-87563669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs116792587	chr6:87563752-87563753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576536943	chr6:87563777-87563778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Developmental delay	19490664	CNVD
Schizophrenia	23813976	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87559200-87566000	Weak transcription	Fetal Lung	lung
2	chr6:87565800-87566400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:87565800-87567400	Enhancers	Ovary	ovary
4	chr6:87566000-87566600	Enhancers	Fetal Lung	lung
5	chr6:87566600-87567000	Weak transcription	Fetal Lung	lung
6	chr6:87567000-87567600	Enhancers	Fetal Lung	lung
7	chr6:87567200-87567600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:87577600-87577800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:87578000-87582600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:87582600-87582800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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