Variant report

Variant	nsv817705
Chromosome Location	chr15:87682627-87687175
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:87677782..87683862-chr15:87687780..87692291,5	MCF-7	breast:

Extended variants
information (count: 181 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:181 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11855086	chr15:87682627-87682628	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs538470775	chr15:87682639-87682640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566434075	chr15:87682662-87682663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs372261889	chr15:87682692-87682693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201405917	chr15:87682728-87682729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs202203191	chr15:87682736-87682737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs72239971	chr15:87682737-87682738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs368706655	chr15:87682746-87682747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs561460484	chr15:87682747-87682748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549196204	chr15:87682767-87682768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs5814275	chr15:87682770-87682771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs577626446	chr15:87682771-87682772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557164986	chr15:87682777-87682778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs398028226	chr15:87682789-87682790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201514076	chr15:87682797-87682798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs71979459	chr15:87682800-87682801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201454698	chr15:87682810-87682811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs78034463	chr15:87682811-87682812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138812049	chr15:87682837-87682838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs570467731	chr15:87682848-87682849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs575809748	chr15:87682880-87682881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs537978956	chr15:87682930-87682931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs146410417	chr15:87682931-87682932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs555040706	chr15:87682943-87682944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574733254	chr15:87682948-87682949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573149448	chr15:87682951-87682952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs149059973	chr15:87682962-87682963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs565426531	chr15:87682963-87682964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs532807576	chr15:87682968-87682969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544426628	chr15:87682991-87682992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368553870	chr15:87682992-87682993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575937786	chr15:87682995-87682996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543453420	chr15:87682996-87682997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs530530546	chr15:87682999-87683000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs548659337	chr15:87683015-87683016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs372570225	chr15:87683030-87683031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs143063685	chr15:87683059-87683060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546540979	chr15:87683060-87683061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs571472648	chr15:87683071-87683072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs116298331	chr15:87683099-87683100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550803288	chr15:87683102-87683103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs529063046	chr15:87683110-87683111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536787267	chr15:87683162-87683163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs79418811	chr15:87683163-87683164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550833644	chr15:87683186-87683187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs573226147	chr15:87683262-87683263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs74934856	chr15:87683286-87683287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs151093762	chr15:87683318-87683319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs74028923	chr15:87683362-87683363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs10555466	chr15:87683378-87683379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21364760	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Spondylocostal dysostosis	21085971	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	17237825	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87667800-87684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:87684000-87684400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:87684400-87685400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:87685400-87686000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:87686000-87686200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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