Variant report

Variant	nsv818141
Chromosome Location	chr3:54639209-54641568
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRTM1-5	chr3:54641193-54641874	ucscGeneNc_uc003dhj_2

Extended variants
information (count: 25 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547847405	chr3:54641222-54641223	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs185076288	chr3:54641248-54641249	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs529767540	chr3:54641254-54641255	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs549464954	chr3:54641266-54641267	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs569958670	chr3:54641294-54641295	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs191544219	chr3:54641296-54641297	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs552449935	chr3:54641298-54641299	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs586391	chr3:54641341-54641342	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs534969514	chr3:54641348-54641349	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs555034473	chr3:54641370-54641371	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs568442054	chr3:54641375-54641376	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs537588885	chr3:54641380-54641381	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs182929019	chr3:54641420-54641421	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs11714443	chr3:54641423-54641424	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs545211415	chr3:54641437-54641438	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs558434611	chr3:54641438-54641439	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs577676792	chr3:54641449-54641450	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs188712680	chr3:54641459-54641460	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs560599521	chr3:54641463-54641464	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs192843071	chr3:54641464-54641465	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs73844111	chr3:54641473-54641474	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs563049460	chr3:54641478-54641479	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs532079669	chr3:54641511-54641512	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs552751374	chr3:54641512-54641513	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs2884808	chr3:54641568-54641569	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:83)

Disease	PMID	Source
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Acute myeloid leukemia	20729466	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21785460	CNVD
Neuroblastoma	17327916	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Renal cell carcinoma	18765545	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	19490591	CNVD
Autism	18414403	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-small cell lung cancer	20864512	CNVD
Metastatic melanoma	17975146	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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