Variant report
| Variant | nsv818805 |
|---|---|
| Chromosome Location | chr11:24784922-24793160 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs570392882 | chr11:24788812-24788813 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs572812704 | chr11:24788834-24788835 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs552622896 | chr11:24788859-24788860 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs569406091 | chr11:24788881-24788882 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs368451674 | chr11:24788883-24788884 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs539900601 | chr11:24788884-24788885 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs372845112 | chr11:24788904-24788905 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs187538367 | chr11:24788905-24788906 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs7934614 | chr11:24788929-24788930 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 10 | rs76975805 | chr11:24788983-24788984 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs568219339 | chr11:24789007-24789008 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs145818930 | chr11:24789011-24789012 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs538239690 | chr11:24789029-24789030 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs553743114 | chr11:24789034-24789035 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs563948042 | chr11:24789047-24789048 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs2631409 | chr11:24789050-24789051 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs539688052 | chr11:24789057-24789058 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs556197032 | chr11:24789063-24789064 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs576143840 | chr11:24789067-24789068 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs542048093 | chr11:24789101-24789102 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs12287149 | chr11:24789118-24789119 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 22 | rs568773145 | chr11:24789157-24789158 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs556253913 | chr11:24789171-24789172 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs191601961 | chr11:24789193-24789194 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs535648476 | chr11:24789268-24789269 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs77190564 | chr11:24789288-24789289 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs12280401 | chr11:24789316-24789317 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 28 | rs182644164 | chr11:24789379-24789380 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs12280356 | chr11:24789395-24789396 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 30 | rs531745193 | chr11:24789400-24789401 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:54)
| Disease | PMID | Source |
|---|---|---|
| Burkitt''s lymphoma | 19759907 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Melanoma | 18172304 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Parathyroid adenoma | 22454399 | CNVD |
| Chordoma | 21602918 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 19222835 | CNVD |
| T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Beckwith-Wiedemann syndrome | 21518781 | CNVD |
| Wilms tumour | 21518781 | CNVD |
| Hepatoblastoma | 21518781 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 21785460 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Congenital diaphragmatic hernia | 21525063 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Potocki-Shaffer syndrome | 19222835 | CNVD |
| WAGR syndrome | 19222835 | CNVD |
| Chordoma | 18071362 | CNVD |
| Autism | 22102821 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:24788800-24789400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
