Variant report

Variant	nsv819263
Chromosome Location	chr10:888068-889094
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:888915..891508-chr10:975233..977563,2	MCF-7	breast:
2	chr10:887619..890410-chr10:894669..896676,2	MCF-7	breast:
3	chr10:878636..882956-chr10:886285..890248,4	MCF-7	breast:
4	chr10:884410..889606-chr10:890203..894032,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107929	chromatin interactions

Extended variants
information (count: 45 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1341741	chr10:888073-888074	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs113147784	chr10:888095-888096	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs144937075	chr10:888103-888104	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs536504689	chr10:888122-888123	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs189777122	chr10:888154-888155	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs577311408	chr10:888155-888156	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs545939602	chr10:888177-888178	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs180976554	chr10:888178-888179	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs551514288	chr10:888231-888232	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1341742	chr10:888240-888241	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs141122209	chr10:888259-888260	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs142533167	chr10:888280-888281	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs150953488	chr10:888379-888380	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140792063	chr10:888384-888385	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs11253461	chr10:888398-888399	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs560049144	chr10:888414-888415	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs532235353	chr10:888415-888416	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184564581	chr10:888436-888437	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs189034233	chr10:888467-888468	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs536548359	chr10:888640-888641	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs372798247	chr10:888647-888648	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs548187722	chr10:888666-888667	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575740282	chr10:888667-888668	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs181903567	chr10:888671-888672	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534219575	chr10:888704-888705	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs150131338	chr10:888719-888720	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs80032019	chr10:888759-888760	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs376820899	chr10:888825-888826	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201743671	chr10:888835-888836	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs199506199	chr10:888836-888837	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs539944215	chr10:888860-888861	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs556205663	chr10:888894-888895	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs139387430	chr10:888899-888900	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs150067638	chr10:888916-888917	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs145313674	chr10:888921-888922	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs555331681	chr10:888926-888927	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs141341678	chr10:888927-888928	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs143828396	chr10:888939-888940	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs146693848	chr10:888948-888949	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs370718733	chr10:888972-888973	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs374131748	chr10:889041-889042	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs201848603	chr10:889043-889044	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs377327860	chr10:889054-889055	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs138680451	chr10:889060-889061	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs576925967	chr10:889061-889062	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:142 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:851600-889800	Strong transcription	Dnd41	blood
2	chr10:851600-890800	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:851600-895600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:851800-894000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:851800-895800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:852800-891800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:852800-894600	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr10:852800-895000	Strong transcription	Fetal Thymus	thymus
10	chr10:856200-892800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:865400-890000	Weak transcription	Right Atrium	heart
12	chr10:867400-890200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:869000-889400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:869400-890800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:869600-894000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:869600-895200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:869600-896000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:870000-892000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:870000-892200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:870000-896400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr10:870600-892200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
23	chr10:872400-889800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:873400-895600	Strong transcription	Primary B cells from cord blood	blood
25	chr10:875400-890000	Weak transcription	Fetal Heart	heart
26	chr10:875400-903000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:877600-888800	Weak transcription	NHEK	skin
28	chr10:878600-891600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:878800-890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:878800-890800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:878800-891000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:879000-895600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:880000-891600	Strong transcription	Liver	Liver
34	chr10:880000-893200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:880600-888400	Strong transcription	Primary hematopoietic stem cells	blood
36	chr10:881000-890800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr10:882400-888200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:883200-889800	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:883200-917200	Weak transcription	Colonic Mucosa	Colon
40	chr10:883600-890000	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr10:883800-889800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:883800-889800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:884000-889800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:884000-889800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr10:884000-890400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:884000-890600	Strong transcription	Placenta	Placenta
47	chr10:884000-890800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr10:884000-892000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:884200-890000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:884200-890800	Strong transcription	NHDF-Ad	bronchial

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