Variant report

Variant	nsv819599
Chromosome Location	chr16:76538187-76543948
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:76534271..76535887-chr16:76537682..76540215,2	MCF-7	breast:
2	chr16:76542177..76544098-chr6:26155995..26158781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158373	chromatin interactions
ENSG00000168298	chromatin interactions

Extended variants
information (count: 241 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:241 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567956853	chr16:76538200-76538201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533306932	chr16:76538227-76538228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs79065829	chr16:76538275-76538276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547175152	chr16:76538276-76538277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs115252768	chr16:76538292-76538293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539151627	chr16:76538293-76538294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs35882420	chr16:76538313-76538314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs79346302	chr16:76538322-76538323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs80175969	chr16:76538323-76538324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs527860637	chr16:76538389-76538390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141653714	chr16:76538406-76538407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs575636448	chr16:76538412-76538413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs190904323	chr16:76538456-76538457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs549310094	chr16:76538477-76538478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573561235	chr16:76538488-76538489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs542426391	chr16:76538507-76538508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs181993700	chr16:76538551-76538552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs145936503	chr16:76538556-76538557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186001735	chr16:76538569-76538570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376692747	chr16:76538576-76538577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs564818201	chr16:76538620-76538621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs531053082	chr16:76538629-76538630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs139989201	chr16:76538630-76538631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs370022616	chr16:76538646-76538647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs143459848	chr16:76538652-76538653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs118051162	chr16:76538653-76538654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs556450203	chr16:76538679-76538680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530389872	chr16:76538697-76538698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs576319271	chr16:76538721-76538722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs567631533	chr16:76538732-76538733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532587012	chr16:76538744-76538745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11644653	chr16:76538745-76538746	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs34298888	chr16:76538748-76538749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs558507102	chr16:76538750-76538751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs569206277	chr16:76538772-76538773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572082703	chr16:76538789-76538790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs554505203	chr16:76538795-76538796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs567248540	chr16:76538817-76538818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs537858885	chr16:76538843-76538844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs116394171	chr16:76538851-76538852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs190920076	chr16:76538852-76538853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs573036232	chr16:76538887-76538888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs544873839	chr16:76538904-76538905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146249668	chr16:76538932-76538933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs575209729	chr16:76538962-76538963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544242460	chr16:76538972-76538973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs139125930	chr16:76538974-76538975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs529697100	chr16:76538984-76538985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs538105294	chr16:76538991-76538992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs369573498	chr16:76538997-76538998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Schizophrenia	23813976	CNVD
Lung cancer	24585490	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76525200-76554000	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links