Variant report

Variant	nsv819604
Chromosome Location	chr8:115307673-115308896
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:115308430..115310814-chr8:115329605..115331962,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CSMD3-5	chr8:115308063-115308898	NONHSAT128356

Variant related genes	Relation type
ENSG00000253499	chromatin interactions

Extended variants
information (count: 51 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185838434	chr8:115307675-115307676	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs190307392	chr8:115307699-115307700	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535446590	chr8:115307702-115307703	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs148513147	chr8:115307719-115307720	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs141873081	chr8:115307726-115307727	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs182174945	chr8:115307767-115307768	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374031928	chr8:115307812-115307813	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185978426	chr8:115307839-115307840	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs541042074	chr8:115307921-115307922	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs568611722	chr8:115307942-115307943	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs559801418	chr8:115307953-115307954	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs10156269	chr8:115307972-115307973	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs371620420	chr8:115307999-115308000	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs10156270	chr8:115308011-115308012	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs570212864	chr8:115308021-115308022	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs77349937	chr8:115308040-115308041	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs552745103	chr8:115308052-115308053	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562817677	chr8:115308116-115308117	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs571007334	chr8:115308121-115308122	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs535346350	chr8:115308125-115308126	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs147274268	chr8:115308126-115308127	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs565321145	chr8:115308155-115308156	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs113040800	chr8:115308176-115308177	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs535870899	chr8:115308180-115308181	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs554239288	chr8:115308192-115308193	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs192131678	chr8:115308204-115308205	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs76428422	chr8:115308222-115308223	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs202217597	chr8:115308237-115308238	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs546543315	chr8:115308259-115308260	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs558739141	chr8:115308294-115308295	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs539622277	chr8:115308306-115308307	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs117901490	chr8:115308340-115308341	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs573431087	chr8:115308368-115308369	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs79784154	chr8:115308374-115308375	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs78039494	chr8:115308388-115308389	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs200762208	chr8:115308474-115308475	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs564651357	chr8:115308475-115308476	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
38	rs78993929	chr8:115308476-115308477	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs530116338	chr8:115308497-115308498	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs140871675	chr8:115308617-115308618	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs61130061	chr8:115308626-115308627	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs531035599	chr8:115308637-115308638	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs552464164	chr8:115308675-115308676	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs74856468	chr8:115308719-115308720	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs147954062	chr8:115308726-115308727	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
46	rs184072192	chr8:115308735-115308736	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs568460784	chr8:115308736-115308737	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs552617076	chr8:115308811-115308812	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs139427959	chr8:115308878-115308879	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs188566935	chr8:115308879-115308880	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Gastric cancer	17908304	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Non-small cell lung cancer	19010865	CNVD
small cell lung cancer	20016488	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21364760	CNVD
Neuroticism	17667963	CNVD
Papillary thyroid cancer	17515504	CNVD
Basal cell lymphoma	17053054	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:115302000-115318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:115302800-115310400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:115303400-115308400	Strong transcription	H1 Cell Line	embryonic stem cell
4	chr8:115303600-115309800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:115303800-115308400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:115303800-115311600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:115304000-115318200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:115304400-115310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:115305000-115309400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:115305000-115309400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:115305200-115309200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:115307400-115310400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:115308400-115318600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:115308400-115318800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links