Variant report

Variant	nsv820156
Chromosome Location	chr10:96604474-96611209
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 395 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:395 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540576513	chr10:96604477-96604478	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs115999561	chr10:96604506-96604507	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs562300516	chr10:96604532-96604533	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs573561796	chr10:96604552-96604553	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145947561	chr10:96604566-96604567	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs562459410	chr10:96604572-96604573	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs191453137	chr10:96604592-96604593	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs183168461	chr10:96604600-96604601	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs564372505	chr10:96604619-96604620	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs533435128	chr10:96604698-96604699	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs138588506	chr10:96604731-96604732	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs373703754	chr10:96604733-96604734	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs78259543	chr10:96604737-96604738	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs78517702	chr10:96604744-96604745	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs187137103	chr10:96604772-96604773	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs141801048	chr10:96604809-96604810	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs527359129	chr10:96604810-96604811	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs549421357	chr10:96604830-96604831	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs576316462	chr10:96604835-96604836	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs543376284	chr10:96604866-96604867	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs557975712	chr10:96604890-96604891	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs547486051	chr10:96604891-96604892	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs376261635	chr10:96604893-96604894	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs114662509	chr10:96604905-96604906	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs553793850	chr10:96604935-96604936	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs141681264	chr10:96604939-96604940	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs542282290	chr10:96604947-96604948	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs190738861	chr10:96604951-96604952	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs552896424	chr10:96604988-96604989	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs74390465	chr10:96605031-96605032	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs564042331	chr10:96605051-96605052	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575714194	chr10:96605053-96605054	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544743091	chr10:96605170-96605171	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370633513	chr10:96605175-96605176	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564334137	chr10:96605198-96605199	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533349086	chr10:96605207-96605208	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182970014	chr10:96605217-96605218	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs532900743	chr10:96605219-96605220	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560637359	chr10:96605235-96605236	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549516368	chr10:96605266-96605267	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs116407804	chr10:96605270-96605271	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs76919419	chr10:96605271-96605272	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs373610447	chr10:96605273-96605274	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569276022	chr10:96605293-96605294	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs531839207	chr10:96605314-96605315	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs1555474	chr10:96605327-96605328	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs75217796	chr10:96605339-96605340	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548833763	chr10:96605348-96605349	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs370559110	chr10:96605355-96605356	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs373927682	chr10:96605383-96605384	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96594200-96609800	Weak transcription	Fetal Intestine Large	intestine
2	chr10:96595000-96604600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:96597800-96606400	Weak transcription	Small Intestine	intestine
4	chr10:96601200-96617200	Weak transcription	Fetal Intestine Small	intestine
5	chr10:96601400-96604600	Weak transcription	Fetal Stomach	stomach
6	chr10:96602800-96639400	Weak transcription	Gastric	stomach
7	chr10:96604200-96607000	Strong transcription	Liver	Liver
8	chr10:96604600-96605000	Strong transcription	Duodenum Mucosa	Duodenum
9	chr10:96604600-96605000	Enhancers	Fetal Stomach	stomach
10	chr10:96604800-96605000	Bivalent/Poised TSS	Aorta	Aorta
11	chr10:96605000-96606000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:96605800-96606400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:96605800-96606400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:96606000-96606400	Strong transcription	Duodenum Mucosa	Duodenum
15	chr10:96606400-96609400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:96607000-96608800	Weak transcription	Liver	Liver
17	chr10:96608800-96615600	Strong transcription	Liver	Liver
18	chr10:96609400-96613400	Strong transcription	Duodenum Mucosa	Duodenum
19	chr10:96609800-96613200	Strong transcription	Fetal Intestine Large	intestine

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