Variant report

Variant	nsv820976
Chromosome Location	chr4:98353927-98360029
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:98356561..98358101-chr4:98363641..98366238,2	MCF-7	breast:

Extended variants
information (count: 108 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:108 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370246581	chr4:98358404-98358405	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs139205312	chr4:98358417-98358418	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs144041931	chr4:98358418-98358419	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572653887	chr4:98358420-98358421	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs190505748	chr4:98358443-98358444	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs564540663	chr4:98358445-98358446	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112808171	chr4:98358470-98358471	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs574286224	chr4:98358471-98358472	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs183605815	chr4:98358488-98358489	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs188489757	chr4:98358490-98358491	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374677245	chr4:98358498-98358499	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs562622114	chr4:98358500-98358501	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs544434945	chr4:98358511-98358512	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs563093976	chr4:98358520-98358521	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs13125041	chr4:98358521-98358522	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs533856197	chr4:98358558-98358559	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs536221057	chr4:98358562-98358563	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs552477162	chr4:98358565-98358566	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74926172	chr4:98358567-98358568	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537694335	chr4:98358653-98358654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs112838778	chr4:98358667-98358668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs7655655	chr4:98358686-98358687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535412526	chr4:98358705-98358706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs566545352	chr4:98358753-98358754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs11934034	chr4:98358756-98358757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs546164866	chr4:98358801-98358802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs185726625	chr4:98358802-98358803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs187727636	chr4:98358803-98358804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544071106	chr4:98358852-98358853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs562530870	chr4:98358865-98358866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368135934	chr4:98358890-98358891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529833983	chr4:98358891-98358892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs191301482	chr4:98358903-98358904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs548133571	chr4:98358909-98358910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs559874619	chr4:98358917-98358918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs183849378	chr4:98358921-98358922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527307083	chr4:98358930-98358931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs142594395	chr4:98358931-98358932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs188476107	chr4:98358934-98358935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531362209	chr4:98358940-98358941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549569302	chr4:98358957-98358958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568189093	chr4:98358981-98358982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567964432	chr4:98359000-98359001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs529183713	chr4:98359037-98359038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs181274849	chr4:98359040-98359041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs538721307	chr4:98359053-98359054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs558159336	chr4:98359061-98359062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546876067	chr4:98359066-98359067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs576820322	chr4:98359117-98359118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs185261985	chr4:98359133-98359134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Cancer	19907438	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	19197363	CNVD
Melanoma	20688739	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98358400-98358600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:98358400-98359600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:98358600-98359600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:98359600-98359800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:98359600-98359800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:98359600-98359800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:98359800-98368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:98359800-98368600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links