Variant report

Variant	nsv822174
Chromosome Location	chr3:89066876-89076114
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 398 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:398 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182264339	chr3:89066919-89066920	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs565116570	chr3:89066962-89066963	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs561645170	chr3:89067014-89067015	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs573653415	chr3:89067019-89067020	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs61631874	chr3:89067023-89067024	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs554572871	chr3:89067032-89067033	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs367942885	chr3:89067063-89067064	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs144442148	chr3:89067128-89067129	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370547113	chr3:89067161-89067162	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs373686348	chr3:89067162-89067163	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368854995	chr3:89067164-89067165	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546133858	chr3:89067180-89067181	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148421642	chr3:89067188-89067189	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs531642399	chr3:89067197-89067198	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs112156659	chr3:89067203-89067204	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142571486	chr3:89067266-89067267	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs33923135	chr3:89067279-89067280	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs529358437	chr3:89067323-89067324	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs114192555	chr3:89067364-89067365	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563939947	chr3:89067366-89067367	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559399014	chr3:89067367-89067368	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs147597442	chr3:89067459-89067460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs187329732	chr3:89067464-89067465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs9854567	chr3:89067498-89067499	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs536670358	chr3:89067503-89067504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs555297634	chr3:89067543-89067544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs190189768	chr3:89067637-89067638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs181885582	chr3:89067691-89067692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs185467398	chr3:89067696-89067697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs540766670	chr3:89067699-89067700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552645125	chr3:89067755-89067756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs541871414	chr3:89067796-89067797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs563434848	chr3:89067800-89067801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs114971074	chr3:89067809-89067810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs140061681	chr3:89067810-89067811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs2132582	chr3:89067826-89067827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs532001469	chr3:89067829-89067830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs543454037	chr3:89067860-89067861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs570995384	chr3:89067861-89067862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562072128	chr3:89067884-89067885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs529304445	chr3:89067960-89067961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547941583	chr3:89067964-89067965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs189926323	chr3:89067969-89067970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533179596	chr3:89068038-89068039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs551525931	chr3:89068087-89068088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569855772	chr3:89068133-89068134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs145607068	chr3:89068144-89068145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548347857	chr3:89068163-89068164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555365907	chr3:89068165-89068166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs547231300	chr3:89068171-89068172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	21829676	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
Acute myeloid leukemia	19651600	CNVD

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89061800-89070600	Weak transcription	HMEC	breast
2	chr3:89065400-89067400	Enhancers	Fetal Lung	lung
3	chr3:89068800-89069000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:89068800-89069200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:89069000-89074400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:89069200-89071000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:89070600-89071800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:89070600-89071800	Enhancers	HMEC	breast
9	chr3:89070600-89071800	Enhancers	NHDF-Ad	bronchial
10	chr3:89070600-89071800	Enhancers	Osteobl	bone
11	chr3:89070600-89072000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:89070800-89071200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:89070800-89071200	Enhancers	NH-A	brain
14	chr3:89070800-89071600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:89070800-89071800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:89071000-89071200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:89071000-89071800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:89071000-89071800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:89071000-89072000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:89071200-89073800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:89071200-89073800	Weak transcription	NH-A	brain
22	chr3:89071800-89073200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:89071800-89073800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:89071800-89073800	Weak transcription	NHDF-Ad	bronchial
25	chr3:89071800-89074000	Weak transcription	Osteobl	bone
26	chr3:89071800-89074200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:89071800-89074200	Weak transcription	HMEC	breast
28	chr3:89072000-89073600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:89072000-89073800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:89073200-89074400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr3:89073600-89074000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:89073800-89074000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:89073800-89074200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:89073800-89074200	Enhancers	NH-A	brain
35	chr3:89073800-89074200	Enhancers	NHDF-Ad	bronchial
36	chr3:89073800-89074400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:89073800-89074600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:89074000-89074200	Enhancers	Osteobl	bone
39	chr3:89074000-89074400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:89074000-89074600	Enhancers	Brain Germinal Matrix	brain
41	chr3:89074000-89074800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:89074000-89074800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:89074200-89074400	Flanking Active TSS	Osteobl	bone
44	chr3:89074200-89074600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:89074200-89074600	Active TSS	Brain Substantia Nigra	brain
46	chr3:89074200-89074600	Enhancers	HMEC	breast
47	chr3:89074200-89074600	Active TSS	NH-A	brain
48	chr3:89074200-89074600	Active TSS	NHDF-Ad	bronchial
49	chr3:89074200-89074800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:89074400-89074800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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