Variant report

Variant	nsv822508
Chromosome Location	chr4:26257508-26258851
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11288774	chr4:26257535-26257536	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs541574973	chr4:26257572-26257573	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs552667063	chr4:26257648-26257649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs146453139	chr4:26257690-26257691	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs115385958	chr4:26257698-26257699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs7677206	chr4:26257699-26257700	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs115974070	chr4:26257741-26257742	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs183538768	chr4:26257795-26257796	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs149066803	chr4:26257798-26257799	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs572826868	chr4:26257877-26257878	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs544666085	chr4:26257912-26257913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs558661863	chr4:26257944-26257945	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs575246447	chr4:26257996-26257997	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs4692491	chr4:26258170-26258171	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs561106665	chr4:26258182-26258183	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs530343312	chr4:26258221-26258222	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs540497539	chr4:26258229-26258230	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs550548070	chr4:26258312-26258313	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs188424491	chr4:26258321-26258322	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs148184778	chr4:26258334-26258335	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs141163088	chr4:26258367-26258368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs35148549	chr4:26258403-26258404	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs16878212	chr4:26258434-26258435	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs531789141	chr4:26258459-26258460	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs545662397	chr4:26258476-26258477	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs567432642	chr4:26258496-26258497	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs111684174	chr4:26258517-26258518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs553268055	chr4:26258591-26258592	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs546841431	chr4:26258595-26258596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs112322711	chr4:26258639-26258640	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs16878213	chr4:26258648-26258649	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs73114521	chr4:26258701-26258702	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs138212820	chr4:26258703-26258704	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs537515132	chr4:26258733-26258734	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
Oral squamous cell carcinoma	17134496	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Lung cancer	18438408	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Breast cancer	17133270	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Olfactory neuroblastoma	18408657	CNVD
Burkitt''s lymphoma	20823134	CNVD
Cancer	22183965	CNVD
Gastric cancer	16891809	CNVD
Myelofibrosis	22110671	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26254400-26257600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:26254600-26259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:26256800-26257800	Enhancers	Fetal Brain Male	brain
4	chr4:26257000-26259000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:26257400-26257800	Enhancers	NHDF-Ad	bronchial
6	chr4:26257400-26258400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:26257400-26258600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:26257400-26258600	Enhancers	HSMMtube	muscle
9	chr4:26257600-26257800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:26257600-26258000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr4:26257800-26268600	Weak transcription	Fetal Brain Male	brain
12	chr4:26258000-26258200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:26258200-26258600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr4:26258400-26259200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:26258400-26261600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr4:26258600-26258800	Enhancers	Primary B cells from cord blood	blood
17	chr4:26258800-26259400	Weak transcription	Primary B cells from cord blood	blood

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