Variant report

Variant	nsv822990
Chromosome Location	chr5:5108534-5109848
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10042128	chr5:5108554-5108555	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs566793706	chr5:5108558-5108559	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs191890183	chr5:5108584-5108585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs140917303	chr5:5108592-5108593	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs575661311	chr5:5108611-5108612	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs544612202	chr5:5108627-5108628	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs558269827	chr5:5108648-5108649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs187954270	chr5:5108710-5108711	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs540853362	chr5:5108730-5108731	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs560456891	chr5:5108736-5108737	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs541420150	chr5:5108742-5108743	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs138595477	chr5:5108773-5108774	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs115880767	chr5:5108783-5108784	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs565045972	chr5:5108822-5108823	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs561351117	chr5:5108826-5108827	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs530469787	chr5:5108847-5108848	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs16874715	chr5:5108866-5108867	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs149189388	chr5:5108882-5108883	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs115301736	chr5:5108886-5108887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs143360804	chr5:5108897-5108898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189689417	chr5:5108915-5108916	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs535749240	chr5:5108957-5108958	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs148001481	chr5:5108959-5108960	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs569161999	chr5:5108964-5108965	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs527585909	chr5:5108968-5108969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs182310089	chr5:5109013-5109014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs187971061	chr5:5109014-5109015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs568791804	chr5:5109065-5109066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs549200636	chr5:5109077-5109078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs578065988	chr5:5109106-5109107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs73032468	chr5:5109113-5109114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs75559316	chr5:5109177-5109178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs73032472	chr5:5109210-5109211	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs201402466	chr5:5109238-5109239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs141818220	chr5:5109239-5109240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542809416	chr5:5109251-5109252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562885862	chr5:5109264-5109265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560878702	chr5:5109294-5109295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531437068	chr5:5109298-5109299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs576314736	chr5:5109327-5109328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs202092179	chr5:5109328-5109329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs544216058	chr5:5109344-5109345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs141693610	chr5:5109351-5109352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533055479	chr5:5109400-5109401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs270626	chr5:5109408-5109409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs16874716	chr5:5109464-5109465	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs35757716	chr5:5109609-5109610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs114411933	chr5:5109617-5109618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549181065	chr5:5109643-5109644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs569200795	chr5:5109649-5109650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Glioblastoma multiforme	22286061	CNVD
Lung cancer	21911935	CNVD
Cri-du chat syndrome	21549014	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
abnormal development	18461090	CNVD
Lung cancer	19547694	CNVD
Cri-du chat syndrome	22283845	CNVD
Disorders of sex development	21048976	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Cancer	16751803	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	22174799	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Multiple myeloma	17550852	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Developmental delay	21147756	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Melanoma	22183965	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Schizophrenia	23813976	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5108000-5108600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr5:5108200-5115400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:5108400-5108800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:5108400-5109000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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