Variant report

Variant	nsv823149
Chromosome Location	chr5:97256819-97296603
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2215E18.1.1-3	chr5:97257835-97258399	XLOC_004484

Extended variants
information (count: 424 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:424 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187518307	chr5:97256862-97256863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs147654711	chr5:97256871-97256872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs73156010	chr5:97256885-97256886	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs115120781	chr5:97256899-97256900	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs192088039	chr5:97256902-97256903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs73156014	chr5:97256922-97256923	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs569941844	chr5:97256935-97256936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs142667171	chr5:97256936-97256937	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs550141660	chr5:97256947-97256948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs548664426	chr5:97257043-97257044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs184803551	chr5:97257051-97257052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs17087915	chr5:97257129-97257130	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs377524573	chr5:97257146-97257147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs553026559	chr5:97257182-97257183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs150269122	chr5:97257187-97257188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs538828449	chr5:97257252-97257253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs569414856	chr5:97257295-97257296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs557166993	chr5:97257334-97257335	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs189265762	chr5:97257345-97257346	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs180972229	chr5:97257355-97257356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs554621071	chr5:97257360-97257361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs74541699	chr5:97257856-97257857	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs570996476	chr5:97257892-97257893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs553812025	chr5:97257903-97257904	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs371368552	chr5:97257950-97257951	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs77613473	chr5:97257961-97257962	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs367747435	chr5:97258023-97258024	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs557105368	chr5:97258032-97258033	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs569112333	chr5:97258101-97258102	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs536503608	chr5:97258120-97258121	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs545723034	chr5:97258141-97258142	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs184198766	chr5:97258162-97258163	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs111507581	chr5:97258192-97258193	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs554501821	chr5:97258219-97258220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs540599017	chr5:97258268-97258269	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs189855352	chr5:97258277-97258278	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs577375735	chr5:97258283-97258284	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs138602345	chr5:97258299-97258300	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs563424427	chr5:97258338-97258339	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs530718003	chr5:97258347-97258348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs542507128	chr5:97258349-97258350	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs529739203	chr5:97258352-97258353	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs528412603	chr5:97258361-97258362	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs546542833	chr5:97258398-97258399	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs192238982	chr5:97259864-97259865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs541847628	chr5:97259959-97259960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs112876676	chr5:97260041-97260042	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs1423319	chr5:97260047-97260048	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs527419710	chr5:97260103-97260104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs546388555	chr5:97260132-97260133	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Mental retardation	19471318	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21611746	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97256600-97257200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:97257000-97257400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:97259800-97260600	Enhancers	GM12878-XiMat	blood
4	chr5:97264600-97265800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:97265200-97265800	Enhancers	NHDF-Ad	bronchial
6	chr5:97265800-97271800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:97271800-97272200	Enhancers	Adipose Nuclei	Adipose
8	chr5:97271800-97272200	Enhancers	Brain Cingulate Gyrus	brain
9	chr5:97271800-97272200	Enhancers	Fetal Lung	lung
10	chr5:97271800-97272400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:97271800-97272400	Enhancers	Brain Substantia Nigra	brain
12	chr5:97271800-97272600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:97271800-97272800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:97272000-97272200	Enhancers	NHDF-Ad	bronchial
15	chr5:97272000-97272400	Enhancers	Brain Angular Gyrus	brain
16	chr5:97272000-97272800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:97273200-97274400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:97291400-97291600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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