Variant report

Variant	nsv823175
Chromosome Location	chr5:111786996-111792457
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:111786828-111787027	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr5:111786913-111787063	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr5:111786954-111787059	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr5:111786959-111787125	MCF10A-Er-Src	breast:	n/a	n/a
5	RFX5	chr5:111789943-111790115	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EPB41L4A-1	chr5:111788400-111788686	NONHSAT103229

Variant related genes	Relation type
HMGB3P16	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558260600	chr5:111788402-111788403	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs184377045	chr5:111788421-111788422	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs74706283	chr5:111788424-111788425	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs541260911	chr5:111788481-111788482	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs73220345	chr5:111788491-111788492	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs574628482	chr5:111788513-111788514	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs542166885	chr5:111788527-111788528	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs370712763	chr5:111788559-111788560	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs142231297	chr5:111788591-111788592	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs78720887	chr5:111788601-111788602	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs188689130	chr5:111788603-111788604	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs112727992	chr5:111788609-111788610	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs255720	chr5:111788620-111788621	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs532585053	chr5:111788632-111788633	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs547927406	chr5:111788638-111788639	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs566166154	chr5:111788644-111788645	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs572715927	chr5:111788658-111788659	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs115423348	chr5:111788679-111788680	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs373965719	chr5:111788684-111788685	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs548507750	chr5:111788686-111788687	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs536812527	chr5:111789950-111789951	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs182423597	chr5:111790043-111790044	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs189088700	chr5:111790052-111790053	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs143108059	chr5:111790072-111790073	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs146146230	chr5:111790073-111790074	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs563504744	chr5:111790091-111790092	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs543498766	chr5:111790094-111790095	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs192355561	chr5:111790113-111790114	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Myelofibrosis	22110671	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Colorectal cancer	21297112	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	16461572	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links