Variant report

Variant	nsv823515
Chromosome Location	chr6:32396418-32398887
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 125 )

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9268579	chr6:32396450-32396451	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs3129846	chr6:32396475-32396476	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs367756142	chr6:32396497-32396498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs3129847	chr6:32396506-32396507	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs565368635	chr6:32396529-32396530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs151082168	chr6:32396554-32396555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs3135342	chr6:32396615-32396616	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs372681739	chr6:32396671-32396672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs554070251	chr6:32396682-32396683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs56687397	chr6:32396683-32396684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs61104013	chr6:32396688-32396689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs530441519	chr6:32396716-32396717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs571988225	chr6:32396748-32396749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs570297711	chr6:32396767-32396768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs115098399	chr6:32396787-32396788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs186747933	chr6:32396807-32396808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs571324335	chr6:32396888-32396889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9268580	chr6:32396905-32396906	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs553366517	chr6:32396911-32396912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9268581	chr6:32396930-32396931	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs9268582	chr6:32396964-32396965	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs368010693	chr6:32396965-32396966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs7754635	chr6:32397028-32397029	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs373744242	chr6:32397041-32397042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs3129848	chr6:32397049-32397050	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs7754263	chr6:32397096-32397097	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs577284970	chr6:32397133-32397134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541140320	chr6:32397188-32397189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559815503	chr6:32397189-32397190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs7754570	chr6:32397190-32397191	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs11757645	chr6:32397208-32397209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs115026645	chr6:32397250-32397251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs9268583	chr6:32397266-32397267	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs11757665	chr6:32397278-32397279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs552745283	chr6:32397294-32397295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs386699330	chr6:32397308-32397309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs3129849	chr6:32397309-32397310	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs547067566	chr6:32397311-32397312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs565368317	chr6:32397327-32397328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs535835031	chr6:32397338-32397339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7754753	chr6:32397401-32397402	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs576287898	chr6:32397402-32397403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs9268585	chr6:32397403-32397404	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs143882781	chr6:32397432-32397433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs73404912	chr6:32397433-32397434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs183097687	chr6:32397493-32397494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs114022414	chr6:32397560-32397561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138010246	chr6:32397574-32397575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs201097158	chr6:32397575-32397576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs74589609	chr6:32397576-32397577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:125)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22844521	CNVD
Gestational infection	22844521	CNVD
HIV/AIDS	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Ovarian cancer	21781307	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Myelofibrosis	22110671	CNVD
Incontinentia Pigmenti	22033527	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Encephalopathy	20692195	CNVD
Immune disease	17576883	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32390000-32410000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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