Variant report

Variant	nsv823666
Chromosome Location	chr6:34201401-34207549
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1402)
CpG islands
(count:1284)
Chromatin interactive
region (count:64)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:1402 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:34203901-34204096	K562	blood:	n/a	n/a
2	ARID3A	chr6:34204672-34204939	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:34204026-34204141	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:34204650-34204885	K562	blood:	n/a	n/a
5	ARID3A	chr6:34205911-34205970	K562	blood:	n/a	n/a
6	ARID3A	chr6:34205717-34205869	HepG2	liver:	n/a	n/a
7	ATF2	chr6:34203931-34205103	GM12878	blood:	n/a	n/a
8	ATF2	chr6:34205599-34206775	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr6:34203884-34204262	GM12878	blood:	n/a	n/a
10	ATF2	chr6:34201901-34202934	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF2	chr6:34203276-34204643	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr6:34204275-34204601	GM12878	blood:	n/a	n/a
13	ATF2	chr6:34203212-34204748	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr6:34206778-34207477	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr6:34205677-34206139	GM12878	blood:	n/a	n/a
16	ATF3	chr6:34205808-34206112	K562	blood:	n/a	chr6:34205884-34205893
17	ATF3	chr6:34206688-34207250	K562	blood:	n/a	n/a
18	ATF3	chr6:34205751-34206327	K562	blood:	n/a	chr6:34205884-34205893
19	ATF3	chr6:34204228-34204739	K562	blood:	n/a	chr6:34204588-34204597
20	ATF3	chr6:34203296-34203735	K562	blood:	n/a	n/a
21	BACH1	chr6:34202422-34204707	H1-hESC	embryonic stem cell:	n/a	chr6:34203549-34203563
22	BACH1	chr6:34206024-34206439	K562	blood:	n/a	n/a
23	BACH1	chr6:34203470-34204683	K562	blood:	n/a	chr6:34203549-34203563
24	BACH1	chr6:34207501-34207605	K562	blood:	n/a	n/a
25	BACH1	chr6:34205776-34206195	H1-hESC	embryonic stem cell:	n/a	n/a
26	BATF	chr6:34204030-34204219	GM12878	blood:	n/a	chr6:34204065-34204073
27	BATF	chr6:34204281-34204556	GM12878	blood:	n/a	n/a
28	BCL11A	chr6:34204551-34204762	GM12878	blood:	n/a	n/a
29	BCL11A	chr6:34204791-34205038	GM12878	blood:	n/a	chr6:34204938-34204947 chr6:34204935-34204944 chr6:34204934-34204947
30	BCL11A	chr6:34204248-34204585	GM12878	blood:	n/a	n/a
31	BCL11A	chr6:34205837-34206048	GM12878	blood:	n/a	chr6:34205884-34205897 chr6:34205942-34205951
32	BCL11A	chr6:34204764-34205132	GM12878	blood:	n/a	chr6:34204938-34204947 chr6:34204935-34204944 chr6:34204934-34204947
33	BCL3	chr6:34203373-34203712	A549	lung:	n/a	chr6:34203414-34203427 chr6:34203434-34203443
34	BCL3	chr6:34203369-34204260	K562	blood:	n/a	chr6:34203414-34203427 chr6:34203434-34203443
35	BCL3	chr6:34204235-34205090	GM12878	blood:	n/a	chr6:34204938-34204947 chr6:34204935-34204944 chr6:34204934-34204947
36	BCL3	chr6:34205436-34206203	K562	blood:	n/a	chr6:34205442-34205455 chr6:34205744-34205753 chr6:34205443-34205456 chr6:34205884-34205897 chr6:34205942-34205951 chr6:34205513-34205526
37	BCLAF1	chr6:34203355-34204135	K562	blood:	n/a	chr6:34203414-34203427 chr6:34203434-34203443
38	BCLAF1	chr6:34203336-34205094	GM12878	blood:	n/a	chr6:34204938-34204947 chr6:34203414-34203427 chr6:34203434-34203443 chr6:34204935-34204944 chr6:34204934-34204947
39	BCLAF1	chr6:34205667-34206236	K562	blood:	n/a	chr6:34205744-34205753 chr6:34205884-34205897 chr6:34205942-34205951
40	BCLAF1	chr6:34203716-34204767	GM12878	blood:	n/a	n/a
41	BCLAF1	chr6:34205531-34207192	K562	blood:	n/a	chr6:34205744-34205753 chr6:34205884-34205897 chr6:34205942-34205951
42	BCLAF1	chr6:34203209-34205104	K562	blood:	n/a	chr6:34204938-34204947 chr6:34203272-34203281 chr6:34203414-34203427 chr6:34203434-34203443 chr6:34204935-34204944 chr6:34204934-34204947
43	BCLAF1	chr6:34205732-34206211	GM12878	blood:	n/a	chr6:34205744-34205753 chr6:34205884-34205897 chr6:34205942-34205951
44	BHLHE40	chr6:34203088-34205165	GM12878	blood:	n/a	chr6:34204607-34204623 chr6:34204910-34204926
45	BHLHE40	chr6:34203289-34203573	A549	lung:	n/a	n/a
46	BHLHE40	chr6:34206713-34206745	K562	blood:	n/a	n/a
47	BHLHE40	chr6:34204417-34204945	HepG2	liver:	n/a	chr6:34204607-34204623 chr6:34204910-34204926
48	BHLHE40	chr6:34205772-34206152	K562	blood:	n/a	chr6:34205886-34205902
49	BHLHE40	chr6:34205713-34206325	GM12878	blood:	n/a	chr6:34205886-34205902
50	BHLHE40	chr6:34203081-34204903	K562	blood:	n/a	chr6:34204607-34204623

(count:1284 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:34206084-34206134	SKMC	muscle:	n/a
2	chr6:34206495-34206545	GM12891	blood:	n/a
3	chr6:34206400-34206450	AG09309	skin:	n/a
4	chr6:34206084-34206134	SKMC	muscle:	n/a
5	chr6:34206495-34206545	GM12891	blood:	n/a
6	chr6:34206400-34206450	AG09309	skin:	n/a
7	chr6:34204911-34204961	SKMC	muscle:	n/a
8	chr6:34203564-34203614	HIPEpiC	eye:	n/a
9	chr6:34204459-34204509	HCT-116	colon:	n/a
10	chr6:34206400-34206450	MCF-7	breast:	n/a
11	chr6:34205665-34205715	HepG2	liver:	n/a
12	chr6:34203564-34203614	HCPEpiC	choroid plexus:	n/a
13	chr6:34203564-34203614	SK-N-SH	brain:	n/a
14	chr6:34206495-34206545	BE2_C	brain:	n/a
15	chr6:34206152-34206202	BE2_C	brain:	n/a
16	chr6:34203564-34203614	IMR90	lung:	fetal
17	chr6:34206152-34206202	SKMC	muscle:	n/a
18	chr6:34206152-34206202	GM12878	blood:	n/a
19	chr6:34201689-34201739	SK-N-SH	brain:	n/a
20	chr6:34203564-34203614	HRPEpiC	eye:	n/a
21	chr6:34203153-34203203	LNCaP	prostate:	n/a
22	chr6:34204551-34204601	AG10803	skin:	n/a
23	chr6:34203630-34203680	AG09319	gingival:	n/a
24	chr6:34206495-34206545	AG10803	skin:	n/a
25	chr6:34204698-34204748	Hela-S3	cervix:	n/a
26	chr6:34202568-34202618	HCT-116	colon:	n/a
27	chr6:34206491-34206541	HCF	heart:	n/a
28	chr6:34206495-34206545	LNCaP	prostate:	n/a
29	chr6:34203564-34203614	ProgFib	skin:	n/a
30	chr6:34204555-34204605	HRE	kidney:	n/a
31	chr6:34204459-34204509	ProgFib	skin:	n/a
32	chr6:34206495-34206545	AG09319	gingival:	n/a
33	chr6:34204646-34204696	AoSMC	blood vessel:	n/a
34	chr6:34203564-34203614	H1-hESC	embryonic stem cell:	embryo
35	chr6:34206495-34206545	HCF	heart:	n/a
36	chr6:34204698-34204748	HAEpiC	amniotic membrane:	n/a
37	chr6:34206084-34206134	HepG2	liver:	n/a
38	chr6:34206491-34206541	IMR90	lung:	fetal
39	chr6:34204698-34204748	GM19239	blood:	n/a
40	chr6:34204911-34204961	CMK	blood:	n/a
41	chr6:34206683-34206733	HL-60	blood:	n/a
42	chr6:34204555-34204605	AG04450	lung:	fetal
43	chr6:34206495-34206545	HIPEpiC	eye:	n/a
44	chr6:34205665-34205715	SK-N-MC	brain:	n/a
45	chr6:34203153-34203203	BE2_C	brain:	n/a
46	chr6:34204555-34204605	ovcar-3	ovarian:	n/a
47	chr6:34206400-34206450	HCT-116	colon:	n/a
48	chr6:34203887-34203937	AG09309	skin:	n/a
49	chr6:34203887-34203937	AG04449	skin:	fetal
50	chr6:34204551-34204601	AG09309	skin:	n/a

(count:64 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:34129957..34135547-chr6:34199905..34204260,7	K562	blood:
2	chr6:27114807..27116319-chr6:34202953..34205471,2	K562	blood:
3	chr3:52017009..52017769-chr6:34203221..34204195,2	Hela-S3	cervix:
4	chr6:34202422..34206409-chr6:34359682..34362061,4	MCF-7	breast:
5	chr6:34199862..34202607-chr6:34522713..34524428,2	K562	blood:
6	chr6:32939896..32942243-chr6:34202585..34204574,3	K562	blood:
7	chr11:33061352..33062092-chr6:34204110..34205009,2	Hela-S3	cervix:
8	chr6:32937897..32939542-chr6:34204390..34205971,2	K562	blood:
9	chr3:156877676..156878528-chr6:34205365..34206028,2	Hela-S3	cervix:
10	chr3:156392161..156392699-chr6:34204120..34204941,2	Hela-S3	cervix:
11	chr6:34202333..34204420-chr6:34346794..34349148,2	K562	blood:
12	chr6:34204142..34204871-chr8:145734847..145735360,2	HCT-116	colon:
13	chr6:34199984..34203528-chr6:34381840..34383462,3	K562	blood:
14	chr6:34202383..34217863-chr6:34357259..34364960,37	K562	blood:
15	chr6:33383299..33386120-chr6:34202398..34204899,2	K562	blood:
16	chr6:34204520..34207436-chr6:34522666..34524361,2	K562	blood:
17	chr6:34207322..34209425-chr6:34465568..34467978,2	K562	blood:
18	chr3:53925493..53926256-chr6:34206727..34207251,2	Hela-S3	cervix:
19	chr13:111365203..111365774-chr6:34203417..34204256,2	Hela-S3	cervix:
20	chr6:34205000..34207351-chr6:34521778..34524214,3	MCF-7	breast:
21	chr6:34204158..34206160-chr6:34249084..34250799,2	K562	blood:
22	chr6:33280312..33282313-chr6:34207079..34209267,2	K562	blood:
23	chr6:34202426..34206348-chr6:34246132..34251181,8	K562	blood:
24	chr6:34198528..34202334-chr6:34358171..34361239,4	K562	blood:
25	chr6:34202622..34206817-chr6:34391790..34393979,3	MCF-7	breast:
26	chr6:34204437..34204948-chr9:100745047..100745884,2	HCT-116	colon:
27	chr6:34200640..34204018-chr6:34638884..34642541,3	K562	blood:
28	chr6:34202035..34205684-chr6:35227191..35229008,3	K562	blood:
29	chr6:34201904..34204640-chr6:34398022..34401494,3	K562	blood:
30	chr6:33587172..33590152-chr6:34203876..34205466,2	K562	blood:
31	chr20:43973655..43975022-chr6:34203627..34204195,3	Hela-S3	cervix:
32	chr6:34201904..34204640-chr6:34398634..34402211,3	K562	blood:
33	chr6:34203584..34206226-chr6:34392090..34394590,2	K562	blood:
34	chr2:174828611..174829584-chr6:34204558..34205105,2	NB4	blood:
35	chr6:34204016..34204516-chr6:86353287..86353909,2	Hela-S3	cervix:
36	chr6:34128401..34131565-chr6:34200837..34203571,3	K562	blood:
37	chr6:34068167..34071108-chr6:34207523..34209656,2	K562	blood:
38	chr6:34206853..34209166-chr6:34358536..34360960,2	MCF-7	breast:
39	chr6:34201303..34203546-chr6:34292849..34294793,2	K562	blood:
40	chr6:34203866..34208750-chr6:34388488..34394053,10	MCF-7	breast:
41	chr17:73775389..73776032-chr6:34203614..34204246,2	Hela-S3	cervix:
42	chr6:34203144..34206658-chr6:34358641..34361602,5	MCF-7	breast:
43	chr6:34204127..34204964-chr9:131790137..131790828,2	Hela-S3	cervix:
44	chr6:34202852..34208935-chr6:34358420..34361531,11	K562	blood:
45	chr6:32935087..32937260-chr6:34203527..34205699,2	K562	blood:
46	chr15:79164841..79165710-chr6:34204367..34204927,2	HCT-116	colon:
47	chr6:34163746..34164612-chr6:34205526..34206234,2	MCF-7	breast:
48	chr6:34205221..34206122-chr8:145013261..145014125,2	Hela-S3	cervix:
49	chr6:34203686..34207490-chr6:34388234..34395019,9	K562	blood:
50	chr6:33755468..33757115-chr6:34205033..34207556,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGA1-1	chr6:34203398-34203606	XLOC_005264
2	lnc-HMGA1-1	chr6:34203881-34204471	XLOC_005264

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	HMGA1	hsa-let-7b-5p	chr6:34207098-34207120

Variant related genes	Relation type
HMGA1	TF binding region
HMGA1	CpG island
ENSG00000148341	chromatin interactions
ENSG00000185787	chromatin interactions
ENSG00000124493	chromatin interactions
ENSG00000272325	chromatin interactions
ENSG00000204257	chromatin interactions
ENSG00000114779	chromatin interactions
ENSG00000265565	chromatin interactions
ENSG00000263756	chromatin interactions
ENSG00000136938	chromatin interactions
ENSG00000271231	chromatin interactions
ENSG00000163660	chromatin interactions
ENSG00000167700	chromatin interactions
ENSG00000243989	chromatin interactions
ENSG00000178209	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000100167	chromatin interactions
ENSG00000204256	chromatin interactions
ENSG00000175137	chromatin interactions
ENSG00000135316	chromatin interactions
ENSG00000124664	chromatin interactions
ENSG00000124693	chromatin interactions
ENSG00000225339	chromatin interactions
ENSG00000264500	chromatin interactions
ENSG00000121848	chromatin interactions
ENSG00000184825	chromatin interactions
ENSG00000176148	chromatin interactions
ENSG00000243926	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000161904	chromatin interactions
ENSG00000065060	chromatin interactions
ENSG00000137259	chromatin interactions
ENSG00000231925	chromatin interactions
ENSG00000163659	chromatin interactions
ENSG00000270800	chromatin interactions
ENSG00000065029	chromatin interactions
ENSG00000136381	chromatin interactions
ENSG00000196821	chromatin interactions
ENSG00000113811	chromatin interactions
ENSG00000223837	chromatin interactions
ENSG00000172845	chromatin interactions
ENSG00000153487	chromatin interactions
ENSG00000096433	chromatin interactions
ENSG00000112514	chromatin interactions
ENSG00000124614	chromatin interactions

Extended variants
information (count: 282 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:282 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73744848	chr6:34201407-34201408	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs551229008	chr6:34201425-34201426	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs138745810	chr6:34201428-34201429	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs533776774	chr6:34201459-34201460	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs142242523	chr6:34201469-34201470	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs184816587	chr6:34201505-34201506	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs549535299	chr6:34201531-34201532	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs538149592	chr6:34201540-34201541	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
9	rs556446891	chr6:34201546-34201547	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs35776528	chr6:34201593-34201594	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs146379783	chr6:34201629-34201630	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs189130961	chr6:34201664-34201665	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs564455672	chr6:34201674-34201675	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs573264777	chr6:34201758-34201759	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs192807382	chr6:34201759-34201760	Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs561960117	chr6:34201800-34201801	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs529406577	chr6:34201859-34201860	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs138483868	chr6:34201865-34201866	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs562833335	chr6:34201871-34201872	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs532821905	chr6:34201888-34201889	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs368507849	chr6:34201916-34201917	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs573676760	chr6:34201930-34201931	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs530259562	chr6:34201971-34201972	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs184362407	chr6:34202000-34202001	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs566314639	chr6:34202007-34202008	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs533900938	chr6:34202057-34202058	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
27	rs550097982	chr6:34202063-34202064	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
28	rs549056192	chr6:34202102-34202103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
29	rs7741186	chr6:34202103-34202104	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs189709073	chr6:34202127-34202128	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
31	rs181346103	chr6:34202188-34202189	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
32	rs186004629	chr6:34202189-34202190	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
33	rs144347991	chr6:34202260-34202261	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
34	rs558155543	chr6:34202265-34202266	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
35	rs189201824	chr6:34202266-34202267	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
36	rs566199478	chr6:34202313-34202314	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
37	rs375841472	chr6:34202335-34202336	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs371615863	chr6:34202356-34202357	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs181892357	chr6:34202382-34202383	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs535177066	chr6:34202395-34202396	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
41	rs552920074	chr6:34202399-34202400	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
42	rs187657484	chr6:34202411-34202412	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
43	rs533699003	chr6:34202435-34202436	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
44	rs545340310	chr6:34202469-34202470	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
45	rs560101697	chr6:34202485-34202486	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
46	rs368870293	chr6:34202499-34202500	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs191966819	chr6:34202505-34202506	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
48	rs549150020	chr6:34202510-34202511	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
49	rs567363096	chr6:34202511-34202512	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
50	rs182635392	chr6:34202517-34202518	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	23813976	CNVD
Medulloblastoma	22249617	CNVD

Chromatin state (count:696 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34192400-34202600	Weak transcription	Right Atrium	heart
2	chr6:34192400-34203400	Weak transcription	Pancreas	Pancrea
3	chr6:34192400-34203600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:34192600-34203600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:34192600-34204400	Weak transcription	HSMMtube	muscle
6	chr6:34192800-34203800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:34194400-34203400	Weak transcription	Stomach Mucosa	stomach
8	chr6:34194800-34203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:34195800-34202400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:34195800-34203400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:34195800-34203400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:34195800-34203400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:34195800-34203400	Weak transcription	A549	lung
14	chr6:34195800-34203600	Weak transcription	Spleen	Spleen
15	chr6:34196000-34202600	Weak transcription	Thymus	Thymus
16	chr6:34196400-34202600	Weak transcription	Primary B cells from cord blood	blood
17	chr6:34196600-34202400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:34197000-34202800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:34197200-34203400	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:34197400-34202400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:34197400-34202600	Weak transcription	Fetal Thymus	thymus
22	chr6:34197400-34203400	Weak transcription	K562	blood
23	chr6:34197400-34203600	Weak transcription	NHLF	lung
24	chr6:34198000-34203400	Weak transcription	GM12878-XiMat	blood
25	chr6:34198200-34203400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:34198400-34202400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:34198400-34203200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:34198800-34203400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:34198800-34203400	Weak transcription	Hela-S3	cervix
30	chr6:34199000-34202600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:34199000-34203000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:34199000-34203400	Weak transcription	Esophagus	oesophagus
33	chr6:34199000-34203400	Weak transcription	HMEC	breast
34	chr6:34199000-34203400	Weak transcription	NH-A	brain
35	chr6:34199000-34203800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:34199200-34203000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:34199200-34203400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:34199200-34203400	Weak transcription	NHEK	skin
39	chr6:34199400-34203200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:34199600-34203400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:34199600-34203600	Weak transcription	Brain Anterior Caudate	brain
42	chr6:34200000-34201800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:34200200-34202600	Weak transcription	Right Ventricle	heart
44	chr6:34200400-34201800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:34200400-34202200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr6:34200600-34201800	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr6:34200600-34202000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr6:34200600-34202000	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:34200600-34202200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr6:34200800-34201800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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