Variant report

Variant	nsv823734
Chromosome Location	chr6:74577846-74579862
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:75 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537271359	chr6:74577846-74577847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs144928236	chr6:74577866-74577867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs142044470	chr6:74577906-74577907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs79187960	chr6:74577910-74577911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs187124850	chr6:74577931-74577932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192141804	chr6:74577932-74577933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182966913	chr6:74577933-74577934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185690566	chr6:74577962-74577963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs974972	chr6:74577963-74577964	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs571520969	chr6:74578106-74578107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs538858326	chr6:74578161-74578162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557084605	chr6:74578178-74578179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs575332871	chr6:74578277-74578278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs145896323	chr6:74578299-74578300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376147250	chr6:74578448-74578449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs554367253	chr6:74578451-74578452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572547033	chr6:74578484-74578485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs539801204	chr6:74578485-74578486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs565239365	chr6:74578487-74578488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs372827300	chr6:74578491-74578492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs544492366	chr6:74578505-74578506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs138656854	chr6:74578506-74578507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77611122	chr6:74578530-74578531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs190151048	chr6:74578549-74578550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs560557474	chr6:74578559-74578560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561811655	chr6:74578568-74578569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs74511454	chr6:74578570-74578571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs552577686	chr6:74578580-74578581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141166623	chr6:74578612-74578613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77462401	chr6:74578628-74578629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs536488677	chr6:74578665-74578666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs571921635	chr6:74578668-74578669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556559352	chr6:74578685-74578686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs182506807	chr6:74578701-74578702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs188054224	chr6:74578729-74578730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs34749605	chr6:74578733-74578734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs397888143	chr6:74578739-74578740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs35803572	chr6:74578741-74578742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs377696863	chr6:74578832-74578833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs569082984	chr6:74578843-74578844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs536051099	chr6:74578850-74578851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs554255694	chr6:74578917-74578918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs78194613	chr6:74578946-74578947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs143581497	chr6:74579008-74579009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs75248855	chr6:74579091-74579092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs74688712	chr6:74579119-74579120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs78722357	chr6:74579122-74579123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs78137472	chr6:74579124-74579125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs116073052	chr6:74579159-74579160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs563673821	chr6:74579255-74579256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:74565600-74580400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:74565800-74582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:74567600-74586200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:74568800-74582400	Weak transcription	NHDF-Ad	bronchial
6	chr6:74572200-74580200	Weak transcription	HMEC	breast
7	chr6:74573800-74582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:74576200-74580200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:74576400-74581800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:74576400-74582200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links