Variant report

Variant	nsv824538
Chromosome Location	chr8:11312653-11313977
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:11313214..11317170-chr8:11317580..11320923,5	K562	blood:
2	chr8:11313788..11316536-chr8:11322548..11325766,4	MCF-7	breast:
3	chr8:11306300..11308613-chr8:11308996..11313515,5	K562	blood:
4	chr8:11304077..11306061-chr8:11313210..11316017,2	K562	blood:
5	chr8:11312294..11314584-chr8:11324898..11327052,2	K562	blood:
6	chr8:11306364..11309144-chr8:11311400..11314118,3	MCF-7	breast:
7	chr8:11312570..11318244-chr8:11320573..11323970,6	K562	blood:
8	chr8:11311333..11313794-chr8:11324898..11327371,2	K562	blood:
9	chr8:11273893..11276099-chr8:11313214..11316137,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000154319	chromatin interactions

Extended variants
information (count: 105 )
Associated
traits (count: 138 )

Variant overlapped rSNPs/rCNVs (count:105 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs397934350	chr8:11312663-11312664	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs142331576	chr8:11312666-11312667	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs539029262	chr8:11312678-11312679	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs149067886	chr8:11312686-11312687	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs112502419	chr8:11312687-11312688	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs377202453	chr8:11312688-11312689	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs55865804	chr8:11312689-11312690	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs200697987	chr8:11312690-11312691	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs111485634	chr8:11312696-11312697	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs370982944	chr8:11312702-11312703	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs566059240	chr8:11312704-11312705	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs568826971	chr8:11312714-11312715	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs370728935	chr8:11312715-11312716	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs575371082	chr8:11312784-11312785	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs149258271	chr8:11312795-11312796	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs576215961	chr8:11312796-11312797	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs372616166	chr8:11312800-11312801	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs537390836	chr8:11312826-11312827	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs111741688	chr8:11312832-11312833	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs370358733	chr8:11312855-11312856	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs11773929	chr8:11312861-11312862	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs189354829	chr8:11312882-11312883	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs367703269	chr8:11312894-11312895	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs544688731	chr8:11312898-11312899	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs560060021	chr8:11312919-11312920	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs200034005	chr8:11312923-11312924	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs371197950	chr8:11312941-11312942	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs112982422	chr8:11312949-11312950	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs113783431	chr8:11312958-11312959	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs572068822	chr8:11312979-11312980	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs60532605	chr8:11312984-11312985	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs77171962	chr8:11312996-11312997	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs111453179	chr8:11313043-11313044	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs192090825	chr8:11313054-11313055	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs144499660	chr8:11313091-11313092	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs74204317	chr8:11313120-11313121	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs112896939	chr8:11313145-11313146	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs550142679	chr8:11313146-11313147	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs144372205	chr8:11313147-11313148	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs56155249	chr8:11313150-11313151	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs78465896	chr8:11313151-11313152	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs151035713	chr8:11313189-11313190	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs75064645	chr8:11313190-11313191	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs532416010	chr8:11313199-11313200	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs76206476	chr8:11313206-11313207	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs547498686	chr8:11313207-11313208	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs56235592	chr8:11313208-11313209	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs201455127	chr8:11313233-11313234	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs199620395	chr8:11313278-11313279	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs199839370	chr8:11313302-11313303	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:138)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Gastric cancer	21811585	CNVD
Colorectal cancer	16774939	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11287800-11313600	Weak transcription	Right Atrium	heart
2	chr8:11292400-11313000	Weak transcription	Pancreas	Pancrea
3	chr8:11296200-11319200	Enhancers	Fetal Thymus	thymus
4	chr8:11303600-11323200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:11307200-11314000	Weak transcription	Fetal Heart	heart
6	chr8:11307200-11322000	Weak transcription	HSMMtube	muscle
7	chr8:11307600-11319800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:11307800-11313800	Weak transcription	NHEK	skin
9	chr8:11308200-11313200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:11308200-11313400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:11308400-11314600	Enhancers	Thymus	Thymus
12	chr8:11308600-11314000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:11308600-11314800	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:11308800-11313600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:11308800-11316600	Enhancers	Primary T cells from cord blood	blood
16	chr8:11309400-11313800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr8:11309600-11313200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:11309800-11313800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:11310400-11313800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:11310400-11316400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr8:11310600-11314600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:11310800-11316200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr8:11311000-11313600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:11311000-11313800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:11311200-11313800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr8:11311200-11316200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr8:11311200-11317000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr8:11311200-11317200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:11311400-11313800	Enhancers	A549	lung
30	chr8:11311400-11315200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:11311600-11312800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr8:11311600-11312800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:11311600-11313000	Enhancers	Primary B cells from cord blood	blood
34	chr8:11311600-11314000	Enhancers	Fetal Brain Male	brain
35	chr8:11311600-11314200	Enhancers	Brain Cingulate Gyrus	brain
36	chr8:11311600-11314800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:11311600-11316600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr8:11311800-11312800	Enhancers	Brain Hippocampus Middle	brain
39	chr8:11311800-11312800	Enhancers	Dnd41	blood
40	chr8:11311800-11313200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:11311800-11313400	Enhancers	Brain Angular Gyrus	brain
42	chr8:11311800-11313400	Enhancers	Spleen	Spleen
43	chr8:11311800-11313600	Enhancers	Gastric	stomach
44	chr8:11311800-11313800	Enhancers	Brain Substantia Nigra	brain
45	chr8:11312000-11313000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr8:11312000-11313200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr8:11312000-11313800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr8:11312200-11312800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr8:11312200-11312800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:11312200-11312800	Weak transcription	Esophagus	oesophagus

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