Variant report

Variant	nsv824816
Chromosome Location	chr9:1708103-1709003
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192985295	chr9:1708107-1708108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs144086805	chr9:1708118-1708119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs541190043	chr9:1708143-1708144	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs559963826	chr9:1708153-1708154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs34278734	chr9:1708159-1708160	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs77876078	chr9:1708172-1708173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs146528700	chr9:1708178-1708179	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs185043384	chr9:1708207-1708208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs190319001	chr9:1708217-1708218	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs530116604	chr9:1708219-1708220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs551319464	chr9:1708232-1708233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs141106844	chr9:1708240-1708241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs527409018	chr9:1708261-1708262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs563734204	chr9:1708291-1708292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs567898197	chr9:1708300-1708301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs536800898	chr9:1708301-1708302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs547360221	chr9:1708315-1708316	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs373887621	chr9:1708327-1708328	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs538948903	chr9:1708334-1708335	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs567127457	chr9:1708340-1708341	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs558939256	chr9:1708355-1708356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs572106290	chr9:1708360-1708361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs10117154	chr9:1708363-1708364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs554605024	chr9:1708366-1708367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs577358244	chr9:1708368-1708369	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs373525835	chr9:1708376-1708377	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs144630110	chr9:1708436-1708437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs562658636	chr9:1708456-1708457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs181920369	chr9:1708461-1708462	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs509905	chr9:1708476-1708477	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs537183185	chr9:1708489-1708490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs371058346	chr9:1708532-1708533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs556757540	chr9:1708550-1708551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs527267919	chr9:1708558-1708559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs547522345	chr9:1708560-1708561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs567300888	chr9:1708573-1708574	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs184733583	chr9:1708590-1708591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs373468803	chr9:1708598-1708599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs530252471	chr9:1708600-1708601	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Myelofibrosis	22110671	CNVD
Lynch syndrome	18415027	CNVD
Retinoblastoma	21504564	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	22286061	CNVD
Williams-beuren syndrome	18553513	CNVD
Disorders of sex development	21048976	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
prenatal diagnosis	20453657	CNVD
Gastric cancer	16715143	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	20531469	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:1707200-1708600	Enhancers	HMEC	breast
2	chr9:1707600-1708400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links