Variant report

Variant	nsv824865
Chromosome Location	chr9:15946654-15947416
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548661599	chr9:15946655-15946656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs200193385	chr9:15946665-15946666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111988687	chr9:15946672-15946673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs202006183	chr9:15946693-15946694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200296710	chr9:15946700-15946701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189503111	chr9:15946706-15946707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs552841151	chr9:15946743-15946744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552575317	chr9:15946744-15946745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs3008676	chr9:15946777-15946778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs2382541	chr9:15946781-15946782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368163519	chr9:15946802-15946803	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192348241	chr9:15946839-15946840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553293409	chr9:15946850-15946851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs150263281	chr9:15946899-15946900	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs184704856	chr9:15946900-15946901	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs370999657	chr9:15946906-15946907	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554632306	chr9:15946947-15946948	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189940985	chr9:15947031-15947032	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs181527524	chr9:15947038-15947039	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs564505463	chr9:15947044-15947045	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs375425429	chr9:15947052-15947053	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs186272669	chr9:15947060-15947061	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs541276965	chr9:15947099-15947100	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs559333700	chr9:15947143-15947144	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs373169676	chr9:15947162-15947163	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs529891650	chr9:15947163-15947164	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs73411548	chr9:15947189-15947190	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs189742354	chr9:15947234-15947235	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs769151	chr9:15947240-15947241	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs552611604	chr9:15947242-15947243	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113226115	chr9:15947252-15947253	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs548832033	chr9:15947268-15947269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371741871	chr9:15947347-15947348	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs80175367	chr9:15947358-15947359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs528841006	chr9:15947407-15947408	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs547261991	chr9:15947413-15947414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15933200-15951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15936800-15946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15943800-15954800	Weak transcription	Fetal Lung	lung
4	chr9:15946800-15947800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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