Variant report

Variant	nsv824967
Chromosome Location	chr9:84734683-84739443
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:84734136..84736171-chr9:84744942..84746506,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235377	chromatin interactions

Extended variants
information (count: 154 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:154 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574333201	chr9:84734698-84734699	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs531383267	chr9:84734748-84734749	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs543634706	chr9:84734837-84734838	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs35326765	chr9:84734873-84734874	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs182064901	chr9:84734875-84734876	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs112206193	chr9:84734882-84734883	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs548132506	chr9:84734883-84734884	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs74778509	chr9:84734917-84734918	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs527726800	chr9:84734958-84734959	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs552594756	chr9:84734977-84734978	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs543053261	chr9:84735002-84735003	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs142499075	chr9:84735019-84735020	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs76603129	chr9:84735037-84735038	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs369851479	chr9:84735081-84735082	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs562024921	chr9:84735105-84735106	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs373046144	chr9:84735110-84735111	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs150518812	chr9:84735142-84735143	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs535551926	chr9:84735163-84735164	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs139860181	chr9:84735238-84735239	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs114161600	chr9:84735239-84735240	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs539446740	chr9:84735252-84735253	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs370041046	chr9:84735260-84735261	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs557752302	chr9:84735263-84735264	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs550174063	chr9:84735285-84735286	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs114857153	chr9:84735312-84735313	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs543223206	chr9:84735387-84735388	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs143317827	chr9:84735393-84735394	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs374431001	chr9:84735394-84735395	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs191067307	chr9:84735445-84735446	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs73463485	chr9:84735451-84735452	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs529586276	chr9:84735482-84735483	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs376056472	chr9:84735527-84735528	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs533047620	chr9:84735594-84735595	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs527667149	chr9:84735614-84735615	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs546336299	chr9:84735618-84735619	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs552577823	chr9:84735651-84735652	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs564592130	chr9:84735780-84735781	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs563392416	chr9:84735823-84735824	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs550354816	chr9:84735899-84735900	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs146808945	chr9:84735905-84735906	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs386361344	chr9:84735906-84735907	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs57240274	chr9:84735921-84735922	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs575423378	chr9:84735929-84735930	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs80193657	chr9:84735967-84735968	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs536100647	chr9:84735980-84735981	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs547492229	chr9:84735994-84735995	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs535288686	chr9:84735995-84735996	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs78153427	chr9:84736028-84736029	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs555726402	chr9:84736113-84736114	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs557755863	chr9:84736126-84736127	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Urothelial cell carcinoma	18451213	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Renal cell carcinoma	18765545	CNVD
Astrocytoma	22246337	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Epilepsy	20502679	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Pancreatic cancer	17952125	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84732600-84743400	Weak transcription	Fetal Brain Male	brain
2	chr9:84732800-84744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:84733000-84738000	Weak transcription	Fetal Lung	lung
4	chr9:84738000-84738600	Enhancers	Fetal Lung	lung
5	chr9:84738600-84739000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:84738600-84740400	Weak transcription	Fetal Lung	lung
7	chr9:84738800-84739200	Enhancers	Osteobl	bone
8	chr9:84739000-84742800	Enhancers	Primary B cells from cord blood	blood
9	chr9:84739000-84749000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:84739200-84739600	Weak transcription	Osteobl	bone

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