Variant report

Variant	nsv825076
Chromosome Location	chr1:159683086-159684133
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:306)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:306 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:159683347-159683397	HCF	heart:	n/a
2	chr1:159683347-159683397	HCF	heart:	n/a
3	chr1:159683921-159683971	LNCaP	prostate:	n/a
4	chr1:159683855-159683905	RPTEC	kidney:	n/a
5	chr1:159683921-159683971	GM12892	blood:	n/a
6	chr1:159683347-159683397	HRE	kidney:	n/a
7	chr1:159683813-159683863	HNPCEpiC	eye:	n/a
8	chr1:159683921-159683971	RPTEC	kidney:	n/a
9	chr1:159683855-159683905	MCF-7	breast:	n/a
10	chr1:159683373-159683423	AG10803	skin:	n/a
11	chr1:159683921-159683971	IMR90	lung:	fetal
12	chr1:159683921-159683971	HNPCEpiC	eye:	n/a
13	chr1:159683347-159683397	SKMC	muscle:	n/a
14	chr1:159683921-159683971	SK-N-SH	brain:	n/a
15	chr1:159683813-159683863	Caco-2	colon:	n/a
16	chr1:159683855-159683905	HPAEpiC	pulmonary alveolar:	n/a
17	chr1:159683373-159683423	HRE	kidney:	n/a
18	chr1:159683855-159683905	HMEC	breast:	n/a
19	chr1:159683373-159683423	MCF-7	breast:	n/a
20	chr1:159683921-159683971	HRCEpiC	kidney:	n/a
21	chr1:159683347-159683397	LNCaP	prostate:	n/a
22	chr1:159683813-159683863	BE2_C	brain:	n/a
23	chr1:159683347-159683397	IMR90	lung:	fetal
24	chr1:159683373-159683423	HepG2	liver:	n/a
25	chr1:159683855-159683905	CMK	blood:	n/a
26	chr1:159683855-159683905	K562	blood:	n/a
27	chr1:159683921-159683971	AG09319	gingival:	n/a
28	chr1:159683347-159683397	NHBE	bronchial:	n/a
29	chr1:159683813-159683863	NB4	blood:	n/a
30	chr1:159683921-159683971	HRPEpiC	eye:	n/a
31	chr1:159683813-159683863	HL-60	blood:	n/a
32	chr1:159683373-159683423	AG04450	lung:	fetal
33	chr1:159683855-159683905	AG09319	gingival:	n/a
34	chr1:159683921-159683971	MCF-7	breast:	n/a
35	chr1:159683813-159683863	GM12891	blood:	n/a
36	chr1:159683347-159683397	HIPEpiC	eye:	n/a
37	chr1:159683855-159683905	HUVEC	blood vessel:	n/a
38	chr1:159683373-159683423	K562	blood:	n/a
39	chr1:159683813-159683863	HCT-116	colon:	n/a
40	chr1:159683813-159683863	U87	brain:	n/a
41	chr1:159683347-159683397	Caco-2	colon:	n/a
42	chr1:159683373-159683423	A549	lung:	n/a
43	chr1:159683855-159683905	ECC-1	luminal epithelium:	n/a
44	chr1:159683813-159683863	HIPEpiC	eye:	n/a
45	chr1:159683921-159683971	CMK	blood:	n/a
46	chr1:159683855-159683905	GM12878	blood:	n/a
47	chr1:159683921-159683971	MCF10A-Er-Src	breast:	n/a
48	chr1:159683855-159683905	Hepatocyte	liver:	n/a
49	chr1:159683921-159683971	HCT-116	colon:	n/a
50	chr1:159683373-159683423	AG09309	skin:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C1orf204-3	chr1:159683797-159683870	NONHSAT007010

No data

Variant related genes	Relation type
CRP	CpG island

Extended variants
information (count: 77 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:77 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1130864	chr1:159683091-159683092	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs3093066	chr1:159683099-159683100	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs558506731	chr1:159683109-159683110	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs576659962	chr1:159683122-159683123	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs544003221	chr1:159683138-159683139	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs372821222	chr1:159683153-159683154	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs562030406	chr1:159683154-159683155	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs34385396	chr1:159683168-159683169	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs372908276	chr1:159683185-159683186	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs113028201	chr1:159683207-159683208	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs559730938	chr1:159683209-159683210	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs3093065	chr1:159683213-159683214	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs551234023	chr1:159683215-159683216	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs563245322	chr1:159683216-159683217	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs185492226	chr1:159683223-159683224	Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs555825164	chr1:159683235-159683236	Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs35664422	chr1:159683263-159683264	Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs35031149	chr1:159683264-159683265	Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs34034945	chr1:159683271-159683272	Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs35111807	chr1:159683282-159683283	Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs35972670	chr1:159683284-159683285	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs377014561	chr1:159683330-159683331	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs200949626	chr1:159683347-159683348	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs369477053	chr1:159683363-159683364	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs373914228	chr1:159683374-159683375	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs182799009	chr1:159683375-159683376	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs146931195	chr1:159683399-159683400	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs537243926	chr1:159683404-159683405	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
29	rs1800947	chr1:159683438-159683439	Transcr. at gene 5' and 3'	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs574035205	chr1:159683485-159683486	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
31	rs34340208	chr1:159683493-159683494	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
32	rs376890049	chr1:159683509-159683510	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
33	rs374947007	chr1:159683510-159683511	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
34	rs541480594	chr1:159683525-159683526	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
35	rs201494433	chr1:159683551-159683552	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
36	rs187039951	chr1:159683555-159683556	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
37	rs34200896	chr1:159683592-159683593	Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
38	rs35661750	chr1:159683630-159683631	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs545012452	chr1:159683638-159683639	Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs200571178	chr1:159683653-159683654	Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs563233562	chr1:159683657-159683658	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs530762480	chr1:159683674-159683675	Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs146258487	chr1:159683683-159683684	Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs369190068	chr1:159683684-159683685	Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs372615185	chr1:159683697-159683698	Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs375644141	chr1:159683735-159683736	Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs370584143	chr1:159683744-159683745	Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs528293224	chr1:159683761-159683762	Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs151273324	chr1:159683763-159683764	Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs373463561	chr1:159683787-159683788	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Non-small cell lung cancer	21385341	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Lung cancer	18438408	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Systemic lupus erythematosus	21956041	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	17899364	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Type 2 diabetes	19141583	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Neuroblastoma	18923191	CNVD
Systemic lupus erythematosus	19220326	CNVD
Systemic lupus erythematosus	19287148	CNVD
Glomerulonephritis	19341492	CNVD
Systemic lupus erythematosus	18559452	CNVD
Systemic autoimmune disease	17597778	CNVD
Glomerulonephritis	17008540	CNVD
Glomerulonephritis	16482158	CNVD
Soft tissue tumor	16732325	CNVD
Cancer	17060936	CNVD
Lung cancer	16740712	CNVD
Breast cancer	21045282	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Follicular lymphoma	18703704	CNVD
Myelofibrosis	22110671	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	19602461	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159680800-159683400	Active TSS	Liver	Liver
2	chr1:159681600-159683200	Enhancers	Fetal Intestine Small	intestine
3	chr1:159682400-159683200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:159683400-159683600	Transcr. at gene 5' and 3'	Liver	Liver
5	chr1:159683600-159684400	Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links