Variant report

Variant	nsv825304
Chromosome Location	chr10:23689687-23690777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527655293	chr10:23689690-23689691	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs192529173	chr10:23689733-23689734	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs553793646	chr10:23689756-23689757	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs577055523	chr10:23689757-23689758	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs1110309	chr10:23689759-23689760	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs369650907	chr10:23689767-23689768	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs11013447	chr10:23689789-23689790	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs541539951	chr10:23689805-23689806	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs77021195	chr10:23689829-23689830	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs397844960	chr10:23689830-23689831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs143993107	chr10:23689843-23689844	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs528630808	chr10:23689886-23689887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs377569520	chr10:23689953-23689954	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs1110308	chr10:23689959-23689960	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs547929406	chr10:23689963-23689964	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs185456070	chr10:23689987-23689988	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs547682823	chr10:23689995-23689996	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs187513577	chr10:23690008-23690009	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550234515	chr10:23690055-23690056	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs116300914	chr10:23690056-23690057	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs4747467	chr10:23690071-23690072	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs148246411	chr10:23690073-23690074	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376769496	chr10:23690075-23690076	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs556962340	chr10:23690082-23690083	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs544142585	chr10:23690083-23690084	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs10828449	chr10:23690102-23690103	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs539702297	chr10:23690151-23690152	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs4747468	chr10:23690167-23690168	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs11013448	chr10:23690182-23690183	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs78209076	chr10:23690184-23690185	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs11013449	chr10:23690185-23690186	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs11013450	chr10:23690196-23690197	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs7895722	chr10:23690211-23690212	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs192612815	chr10:23690282-23690283	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs184865053	chr10:23690283-23690284	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs573018046	chr10:23690286-23690287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs141286775	chr10:23690349-23690350	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs4748880	chr10:23690360-23690361	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs563927204	chr10:23690361-23690362	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529316971	chr10:23690443-23690444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369170264	chr10:23690450-23690451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs372980627	chr10:23690471-23690472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs566085695	chr10:23690484-23690485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs34324518	chr10:23690520-23690521	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs34842656	chr10:23690534-23690535	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs75451913	chr10:23690536-23690537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs35353501	chr10:23690544-23690545	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs556040722	chr10:23690555-23690556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs35634725	chr10:23690580-23690581	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs116155485	chr10:23690677-23690678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Glioblastoma multiforme	22286061	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23688600-23690000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:23688600-23691400	Weak transcription	Left Ventricle	heart
3	chr10:23688600-23691600	Weak transcription	Psoas Muscle	Psoas
4	chr10:23688800-23691400	Weak transcription	Stomach Mucosa	stomach
5	chr10:23688800-23691600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:23688800-23691800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:23688800-23694800	Weak transcription	Placenta	Placenta
8	chr10:23689000-23690000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:23689000-23690000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr10:23689000-23690400	Enhancers	Fetal Heart	heart
11	chr10:23689000-23690400	Enhancers	HSMM	muscle
12	chr10:23689000-23693400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:23689400-23691400	Weak transcription	HSMMtube	muscle
14	chr10:23689400-23691800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:23689400-23701000	Weak transcription	Osteobl	bone
16	chr10:23690000-23690400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:23690000-23690400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:23690400-23691400	Weak transcription	HSMM	muscle
19	chr10:23690400-23691600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:23690400-23691800	Weak transcription	Fetal Heart	heart
21	chr10:23690400-23693000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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