Variant report

Variant	nsv825358
Chromosome Location	chr10:45846158-45846722
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559926221	chr10:45846177-45846178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533252278	chr10:45846184-45846185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs533148278	chr10:45846190-45846191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs569973893	chr10:45846191-45846192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs142136944	chr10:45846200-45846201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs116512122	chr10:45846231-45846232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs144147163	chr10:45846242-45846243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567968206	chr10:45846271-45846272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs576714601	chr10:45846299-45846300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535314613	chr10:45846317-45846318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs553544269	chr10:45846372-45846373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192781337	chr10:45846374-45846375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs72788095	chr10:45846404-45846405	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs183259731	chr10:45846412-45846413	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs557798721	chr10:45846419-45846420	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs575956074	chr10:45846462-45846463	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs543393711	chr10:45846489-45846490	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs200193107	chr10:45846518-45846519	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs188483609	chr10:45846527-45846528	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs193077706	chr10:45846546-45846547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs574378594	chr10:45846561-45846562	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs72788096	chr10:45846569-45846570	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs559669104	chr10:45846583-45846584	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs533540608	chr10:45846602-45846603	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs184217579	chr10:45846634-45846635	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs371307447	chr10:45846641-45846642	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs530817711	chr10:45846709-45846710	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Glioblastoma multiforme	21138945	CNVD
Autism	19287141	CNVD
Intellectual disability	21948486	CNVD
Glioblastoma multiforme	21525872	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45844200-45848200	Weak transcription	Esophagus	oesophagus
2	chr10:45846400-45847200	Enhancers	GM12878-XiMat	blood

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