Variant report

Variant	nsv825482
Chromosome Location	chr10:83117023-83122315
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:133 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560242951	chr10:83117207-83117208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs533823636	chr10:83117256-83117257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs265487	chr10:83117262-83117263	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs265486	chr10:83117353-83117354	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs545932093	chr10:83117383-83117384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs559156310	chr10:83117448-83117449	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs575912013	chr10:83117479-83117480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs544576152	chr10:83117485-83117486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs561667158	chr10:83117510-83117511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs530028159	chr10:83117529-83117530	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs67701535	chr10:83117537-83117538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs73313648	chr10:83117618-83117619	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs531639024	chr10:83117665-83117666	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs542555404	chr10:83117673-83117674	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs182988433	chr10:83117680-83117681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs140763953	chr10:83117703-83117704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs11189496	chr10:83117716-83117717	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs374362918	chr10:83117733-83117734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs528329872	chr10:83117773-83117774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs568661355	chr10:83117803-83117804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs265485	chr10:83117804-83117805	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs548176758	chr10:83117878-83117879	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs187284386	chr10:83117923-83117924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs10883048	chr10:83117924-83117925	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs191778813	chr10:83117985-83117986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs201621412	chr10:83117992-83117993	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs138931996	chr10:83118012-83118013	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs149415316	chr10:83118014-83118015	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556341109	chr10:83118033-83118034	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs575741381	chr10:83118045-83118046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547492082	chr10:83118062-83118063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs544825716	chr10:83118101-83118102	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs265484	chr10:83118148-83118149	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs184517461	chr10:83118162-83118163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs143762711	chr10:83118166-83118167	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs138441468	chr10:83118178-83118179	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs532371204	chr10:83118194-83118195	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs539428993	chr10:83118200-83118201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs7393548	chr10:83118201-83118202	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs118141383	chr10:83118223-83118224	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs531387537	chr10:83118231-83118232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs143919150	chr10:83118237-83118238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs147263720	chr10:83118259-83118260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs200950981	chr10:83118275-83118276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs265483	chr10:83118319-83118320	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs570459049	chr10:83118330-83118331	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs539481450	chr10:83118340-83118341	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs140738569	chr10:83118378-83118379	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs265482	chr10:83118433-83118434	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs535218637	chr10:83118466-83118467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:83117200-83118400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:83118400-83120400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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