Variant report

Variant	nsv825501
Chromosome Location	chr10:90294867-90295700
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90284453..90286680-chr10:90293279..90295834,2	MCF-7	breast:
2	chr10:89622081..89624106-chr10:90294279..90296284,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	chromatin interactions
ENSG00000227268	chromatin interactions

Extended variants
information (count: 32 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77596864	chr10:90294870-90294871	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs538298112	chr10:90294904-90294905	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs142890497	chr10:90294942-90294943	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs568362798	chr10:90295016-90295017	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs59387861	chr10:90295017-90295018	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs557672539	chr10:90295077-90295078	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs558238268	chr10:90295087-90295088	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs10736358	chr10:90295138-90295139	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs112897116	chr10:90295139-90295140	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs113424003	chr10:90295186-90295187	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs558188854	chr10:90295256-90295257	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs573263140	chr10:90295259-90295260	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs182562479	chr10:90295295-90295296	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs555873676	chr10:90295306-90295307	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs547346631	chr10:90295355-90295356	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs573812895	chr10:90295367-90295368	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs544091169	chr10:90295400-90295401	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs146054022	chr10:90295420-90295421	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs10736359	chr10:90295430-90295431	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs568833052	chr10:90295485-90295486	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs148291720	chr10:90295506-90295507	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs559758488	chr10:90295526-90295527	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs550832056	chr10:90295558-90295559	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs186905169	chr10:90295561-90295562	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs560636397	chr10:90295565-90295566	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs371507704	chr10:90295567-90295568	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs141419546	chr10:90295603-90295604	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs550918265	chr10:90295621-90295622	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs190977058	chr10:90295651-90295652	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs539782208	chr10:90295659-90295660	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs148649316	chr10:90295668-90295669	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs113603556	chr10:90295680-90295681	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Melanoma	17363583	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Melanoma	20877625	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90288600-90296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:90289000-90297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:90289200-90296000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:90289200-90296400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:90289400-90296400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:90290000-90296600	Weak transcription	HSMM	muscle
7	chr10:90290000-90297000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:90291600-90297000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:90291800-90296200	Weak transcription	Fetal Lung	lung
10	chr10:90292000-90296800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:90292000-90297400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:90293800-90296400	Weak transcription	Psoas Muscle	Psoas
13	chr10:90294800-90298000	Weak transcription	Liver	Liver
14	chr10:90295600-90296000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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