Variant report

Variant	nsv825503
Chromosome Location	chr10:90521185-90522269
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs374782630	chr10:90521199-90521200	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs368215454	chr10:90521221-90521222	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs372594059	chr10:90521240-90521241	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs374553115	chr10:90521275-90521276	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs368757108	chr10:90521293-90521294	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs564037447	chr10:90521327-90521328	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs560908903	chr10:90521333-90521334	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs11202845	chr10:90521352-90521353	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs530040659	chr10:90521384-90521385	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs187343373	chr10:90521395-90521396	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs541700950	chr10:90521439-90521440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs147173963	chr10:90521476-90521477	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs548837614	chr10:90521504-90521505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs76565247	chr10:90521508-90521509	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs199961943	chr10:90521509-90521510	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs61854001	chr10:90521512-90521513	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs200398534	chr10:90521513-90521514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs12258975	chr10:90521516-90521517	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs75394851	chr10:90521519-90521520	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs443591	chr10:90521520-90521521	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs55811851	chr10:90521524-90521525	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs61854002	chr10:90521528-90521529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs548599036	chr10:90521533-90521534	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs12268129	chr10:90521536-90521537	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs147830303	chr10:90521537-90521538	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs398114613	chr10:90521540-90521541	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs12258979	chr10:90521544-90521545	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs10580567	chr10:90521548-90521549	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs398014387	chr10:90521552-90521553	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs192287545	chr10:90521596-90521597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs548762410	chr10:90521598-90521599	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs303466	chr10:90521616-90521617	Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs149849988	chr10:90521630-90521631	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs182636873	chr10:90521705-90521706	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs570463957	chr10:90521721-90521722	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs534705468	chr10:90521727-90521728	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs553133753	chr10:90521739-90521740	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs368675125	chr10:90521742-90521743	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs145900622	chr10:90521764-90521765	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs367705347	chr10:90521866-90521867	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs373842564	chr10:90521899-90521900	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs371251002	chr10:90521901-90521902	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs374684191	chr10:90521924-90521925	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs368990506	chr10:90521938-90521939	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs111790732	chr10:90521946-90521947	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs575526609	chr10:90521965-90521966	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs200581107	chr10:90521971-90521972	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs187594634	chr10:90521982-90521983	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs369592436	chr10:90521994-90521995	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs373749667	chr10:90522009-90522010	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Bipolar disorder	19114987	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90514600-90523200	Weak transcription	NHEK	skin
2	chr10:90514800-90523400	Weak transcription	Hela-S3	cervix
3	chr10:90515000-90523200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:90519000-90521400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr10:90519400-90523400	Weak transcription	Adipose Nuclei	Adipose
6	chr10:90521000-90521600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:90521000-90522000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:90521400-90521600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:90521600-90522200	Genic enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:90521600-90525200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:90522000-90522600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:90522000-90523000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr10:90522000-90524400	Enhancers	GM12878-XiMat	blood
14	chr10:90522200-90522400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:90522200-90523200	Strong transcription	Monocytes-CD14+_RO01746	blood

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