Variant report

Variant	nsv825508
Chromosome Location	chr10:92065325-92065777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92064760..92066679-chr10:92166883..92168806,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571952804	chr10:92065368-92065369	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
2	rs549575432	chr10:92065408-92065409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs4253986	chr10:92065426-92065427	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs535075264	chr10:92065442-92065443	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs546617897	chr10:92065447-92065448	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs535470813	chr10:92065450-92065451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs139850442	chr10:92065458-92065459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs114420901	chr10:92065459-92065460	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs2900955	chr10:92065512-92065513	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs183235037	chr10:92065597-92065598	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs564426586	chr10:92065634-92065635	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs369664478	chr10:92065635-92065636	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs557665341	chr10:92065666-92065667	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs148469436	chr10:92065680-92065681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs558382716	chr10:92065686-92065687	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs377529160	chr10:92065693-92065694	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs386746445	chr10:92065699-92065700	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs11186118	chr10:92065701-92065702	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs145318366	chr10:92065715-92065716	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs61095249	chr10:92065716-92065717	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs573916190	chr10:92065717-92065718	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs11186119	chr10:92065758-92065759	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92061400-92077800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:92061600-92065400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:92062200-92065600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:92062800-92066200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:92063200-92068800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:92063400-92066200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:92063600-92067200	Enhancers	NHLF	lung
8	chr10:92063800-92066200	Weak transcription	Fetal Stomach	stomach
9	chr10:92063800-92074200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:92064200-92065400	Enhancers	Fetal Lung	lung
11	chr10:92065000-92065400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:92065000-92065400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:92065000-92065800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:92065200-92065400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
15	chr10:92065200-92065400	Bivalent Enhancer	NH-A	brain
16	chr10:92065200-92066600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:92065200-92066600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:92065200-92066600	Enhancers	Osteobl	bone
19	chr10:92065200-92068800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:92065400-92065600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:92065400-92065600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:92065400-92066200	Weak transcription	Fetal Lung	lung
23	chr10:92065400-92066200	Enhancers	NH-A	brain
24	chr10:92065400-92066600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:92065400-92066800	Enhancers	HUVEC	blood vessel
26	chr10:92065600-92066600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:92065600-92074200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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