Variant report

Variant	nsv825525
Chromosome Location	chr10:95818696-95819230
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs143772619	chr10:95818721-95818722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs183646164	chr10:95818724-95818725	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs78670656	chr10:95818725-95818726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs115866572	chr10:95818787-95818788	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs4918057	chr10:95818921-95818922	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs542801990	chr10:95818930-95818931	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188301907	chr10:95818986-95818987	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs192620453	chr10:95818989-95818990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs12258726	chr10:95819052-95819053	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs540396379	chr10:95819101-95819102	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs148156881	chr10:95819160-95819161	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs529132305	chr10:95819179-95819180	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs548689204	chr10:95819204-95819205	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs142012059	chr10:95819212-95819213	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95803400-95819800	Weak transcription	Fetal Intestine Large	intestine
2	chr10:95806400-95822600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:95813800-95821600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:95814000-95828600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:95814200-95822800	Weak transcription	Aorta	Aorta
6	chr10:95814400-95824200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:95814400-95836400	Weak transcription	Psoas Muscle	Psoas
8	chr10:95815800-95818800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:95815800-95824800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:95817200-95819600	Enhancers	A549	lung
11	chr10:95818200-95819600	Enhancers	Stomach Mucosa	stomach
12	chr10:95818800-95819200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr10:95819000-95819200	Enhancers	Esophagus	oesophagus
14	chr10:95819000-95819200	Enhancers	Gastric	stomach
15	chr10:95819200-95824800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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