Variant report

Variant	nsv825562
Chromosome Location	chr10:110375607-110430501
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:110379538..110381981-chr10:110384603..110386733,2	MCF-7	breast:
2	chr10:110379538..110381981-chr10:110384603..110386733,2	MCF-7	breast:
3	chr10:110367562..110370011-chr10:110375438..110378123,2	K562	blood:

Extended variants
information (count: 907 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:907 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535753930	chr10:110376602-110376603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs563632833	chr10:110376605-110376606	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs573531657	chr10:110376639-110376640	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs139069217	chr10:110376640-110376641	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs73416691	chr10:110376676-110376677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs377667060	chr10:110376734-110376735	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs370919437	chr10:110376735-110376736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs377559167	chr10:110376736-110376737	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs145265400	chr10:110376747-110376748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs547537437	chr10:110376761-110376762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs74155895	chr10:110376764-110376765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs1332260	chr10:110376820-110376821	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs17124878	chr10:110376839-110376840	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs77401242	chr10:110376882-110376883	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs570356541	chr10:110376958-110376959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs568171379	chr10:110376989-110376990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs529269321	chr10:110377023-110377024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs2497166	chr10:110377041-110377042	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs566140686	chr10:110377053-110377054	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs535127502	chr10:110377068-110377069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs557959106	chr10:110377110-110377111	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs376643538	chr10:110377111-110377112	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs78713235	chr10:110377154-110377155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs147610303	chr10:110377160-110377161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs573918105	chr10:110377189-110377190	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs78512352	chr10:110380601-110380602	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs74155896	chr10:110380640-110380641	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs532890153	chr10:110380700-110380701	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs552711750	chr10:110380701-110380702	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs569368484	chr10:110380703-110380704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs115964307	chr10:110380708-110380709	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs370292416	chr10:110380725-110380726	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs548453741	chr10:110380871-110380872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs117237344	chr10:110380888-110380889	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs533890026	chr10:110380924-110380925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs553879723	chr10:110380926-110380927	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs577238238	chr10:110380953-110380954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs188653325	chr10:110380973-110380974	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs181391966	chr10:110381007-110381008	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs576134458	chr10:110381015-110381016	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs140391130	chr10:110381026-110381027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs561954405	chr10:110381060-110381061	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs572381171	chr10:110381066-110381067	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs530551000	chr10:110381075-110381076	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs185783627	chr10:110381088-110381089	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs35760512	chr10:110381101-110381102	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs533012009	chr10:110381115-110381116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs533469415	chr10:110381130-110381131	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs549598145	chr10:110381151-110381152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs117952410	chr10:110381152-110381153	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110376600-110377200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:110380600-110381200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:110384800-110385200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:110385200-110389200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:110386600-110386800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:110389000-110390200	Enhancers	Liver	Liver
7	chr10:110389000-110395000	Enhancers	Fetal Lung	lung
8	chr10:110389200-110391800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:110389400-110390000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:110389800-110392400	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:110390000-110392800	Enhancers	GM12878-XiMat	blood
12	chr10:110390600-110392400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:110391400-110392400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:110392400-110394000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:110392400-110394200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:110394000-110394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:110394000-110394400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:110394200-110394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:110395000-110395400	Weak transcription	Fetal Lung	lung
20	chr10:110395200-110397600	Weak transcription	Fetal Heart	heart
21	chr10:110395400-110395600	Enhancers	Fetal Lung	lung
22	chr10:110395600-110398200	Weak transcription	Fetal Lung	lung
23	chr10:110397800-110398000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:110398200-110399000	Enhancers	Fetal Lung	lung
25	chr10:110414800-110415800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:110415200-110415800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:110421000-110421200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:110421400-110422600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:110422400-110422600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr10:110422600-110423200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:110422600-110424000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr10:110422600-110424400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr10:110422600-110425400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr10:110422800-110423000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:110422800-110423800	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr10:110422800-110424600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:110422800-110425400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:110423200-110423800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr10:110423400-110423800	Enhancers	H9 Cell Line	embryonic stem cell
40	chr10:110423600-110423800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:110423600-110423800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:110423800-110425000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:110423800-110425200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:110424600-110425000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:110425000-110425400	Enhancers	Gastric	stomach
46	chr10:110425000-110425600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:110425200-110425400	Enhancers	H9 Cell Line	embryonic stem cell
48	chr10:110425200-110425400	Enhancers	HUES48 Cell Line	embryonic stem cell

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