Variant report

Variant	nsv825791
Chromosome Location	chr11:24060400-24121392
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 892 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:892 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550810690	chr11:24065215-24065216	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs185666305	chr11:24065223-24065224	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs140197991	chr11:24065237-24065238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs552995612	chr11:24065255-24065256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs566508510	chr11:24065297-24065298	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs568795072	chr11:24065300-24065301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs538715662	chr11:24065329-24065330	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs558710196	chr11:24065344-24065345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs578099747	chr11:24065349-24065350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs188704769	chr11:24065360-24065361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs557586977	chr11:24065367-24065368	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs180672026	chr11:24065394-24065395	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs186166115	chr11:24065402-24065403	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs559297667	chr11:24065444-24065445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs572920511	chr11:24065499-24065500	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs191837988	chr11:24065502-24065503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs184003711	chr11:24065505-24065506	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs565047042	chr11:24065507-24065508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs530682341	chr11:24065510-24065511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs112782598	chr11:24065515-24065516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs540241266	chr11:24065543-24065544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs550500277	chr11:24065556-24065557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs557005877	chr11:24065597-24065598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs1915051	chr11:24076823-24076824	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs558107783	chr11:24076825-24076826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs571602535	chr11:24076829-24076830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs372537941	chr11:24076844-24076845	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs572040863	chr11:24076851-24076852	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs537374459	chr11:24076852-24076853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147573766	chr11:24076865-24076866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs79184403	chr11:24076873-24076874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs144336059	chr11:24076887-24076888	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs78267085	chr11:24076927-24076928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs573298669	chr11:24076966-24076967	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs151165653	chr11:24076981-24076982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs533642342	chr11:24077026-24077027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs574204166	chr11:24077057-24077058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs541333481	chr11:24077058-24077059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs565105683	chr11:24077135-24077136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs74446205	chr11:24077138-24077139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs557867475	chr11:24077158-24077159	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs544534206	chr11:24077181-24077182	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs140559725	chr11:24077209-24077210	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs150448232	chr11:24077280-24077281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs546336337	chr11:24077302-24077303	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs138328794	chr11:24077311-24077312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs12285636	chr11:24077356-24077357	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs140958319	chr11:24077390-24077391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs398015585	chr11:24077391-24077392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs34444382	chr11:24077394-24077395	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24065200-24065600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:24076800-24078000	Enhancers	Adipose Nuclei	Adipose
3	chr11:24085000-24085600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:24085400-24085800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:24085400-24086400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:24085400-24086400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:24085400-24086600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:24085400-24086600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:24085600-24086000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:24085800-24086200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:24085800-24086200	Enhancers	NH-A	brain
12	chr11:24085800-24086400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:24085800-24086400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:24085800-24086600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:24086000-24086400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:24086000-24087400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:24086200-24086400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:24086200-24086600	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr11:24086400-24086800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:24086400-24091800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:24086400-24091800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:24086800-24091800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:24087400-24092000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:24089200-24089800	Enhancers	Stomach Smooth Muscle	stomach
25	chr11:24089600-24090200	Enhancers	Rectal Smooth Muscle	rectum
26	chr11:24089600-24091400	Weak transcription	Fetal Brain Male	brain
27	chr11:24091400-24091600	Enhancers	Fetal Brain Male	brain
28	chr11:24091600-24092000	Weak transcription	Fetal Brain Male	brain
29	chr11:24091600-24092200	Enhancers	Brain Germinal Matrix	brain
30	chr11:24091800-24092200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr11:24091800-24092400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr11:24091800-24092400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:24091800-24092600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr11:24091800-24092600	Enhancers	Fetal Brain Female	brain
35	chr11:24092000-24092400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr11:24092000-24092400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:24092000-24092600	Enhancers	Fetal Brain Male	brain
38	chr11:24098800-24099200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:24099200-24100200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:24099400-24099800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:24099600-24100000	Enhancers	Fetal Lung	lung
42	chr11:24099800-24100200	Enhancers	Stomach Mucosa	stomach
43	chr11:24100200-24101000	Enhancers	Ovary	ovary
44	chr11:24100200-24101400	Enhancers	NHLF	lung
45	chr11:24100200-24101600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:24101600-24104400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:24104000-24104800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr11:24104400-24105200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:24110600-24111400	Enhancers	Fetal Lung	lung
50	chr11:24111400-24114400	Weak transcription	Fetal Lung	lung

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