Variant report

Variant	nsv826079
Chromosome Location	chr11:107671083-107674388
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107673752..107675731-chr11:107729272..107731917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110660	chromatin interactions

Extended variants
information (count: 175 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:175 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372370195	chr11:107671127-107671128	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs34892947	chr11:107671154-107671155	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs199860128	chr11:107671155-107671156	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143974651	chr11:107671166-107671167	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs614473	chr11:107671173-107671174	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs377060386	chr11:107671182-107671183	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs17174388	chr11:107671190-107671191	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs545348839	chr11:107671202-107671203	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs183194165	chr11:107671229-107671230	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs12804516	chr11:107671241-107671242	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs540515453	chr11:107671284-107671285	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs561988805	chr11:107671305-107671306	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs144901702	chr11:107671328-107671329	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs368051332	chr11:107671329-107671330	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs188651952	chr11:107671341-107671342	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs568887808	chr11:107671342-107671343	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs532894516	chr11:107671364-107671365	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs551494978	chr11:107671463-107671464	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs149048575	chr11:107671482-107671483	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs34467109	chr11:107671492-107671493	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs533569742	chr11:107671503-107671504	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs549240709	chr11:107671527-107671528	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs142115628	chr11:107671548-107671549	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs567633470	chr11:107671554-107671555	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs192116304	chr11:107671566-107671567	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs12803756	chr11:107671601-107671602	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs2847189	chr11:107671626-107671627	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs545171881	chr11:107671636-107671637	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs71303238	chr11:107671648-107671649	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147964926	chr11:107671649-107671650	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs554338280	chr11:107671657-107671658	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs11212381	chr11:107671675-107671676	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs12803802	chr11:107671679-107671680	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs386757275	chr11:107671692-107671693	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs12803942	chr11:107671694-107671695	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs12805491	chr11:107671702-107671703	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs544354136	chr11:107671712-107671713	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs2509508	chr11:107671726-107671727	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs562534218	chr11:107671727-107671728	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs11212382	chr11:107671748-107671749	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs12361607	chr11:107671757-107671758	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs12577931	chr11:107671763-107671764	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs566263948	chr11:107671771-107671772	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs529737435	chr11:107671779-107671780	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs527257137	chr11:107671830-107671831	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs548588152	chr11:107671846-107671847	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs147109855	chr11:107671852-107671853	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs12804640	chr11:107671853-107671854	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs12364537	chr11:107671857-107671858	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs12366068	chr11:107671865-107671866	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107654000-107676800	Weak transcription	NH-A	brain
2	chr11:107656600-107673400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:107656600-107679800	Weak transcription	Osteobl	bone
4	chr11:107656800-107673800	Weak transcription	K562	blood
5	chr11:107658800-107679000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:107658800-107680600	Weak transcription	Small Intestine	intestine
7	chr11:107659000-107679200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:107659400-107679200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:107660800-107676800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:107661000-107671200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:107661000-107678600	Weak transcription	Lung	lung
12	chr11:107661000-107693200	Weak transcription	Spleen	Spleen
13	chr11:107661200-107676000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:107661600-107679600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:107661800-107675600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:107661800-107679200	Weak transcription	Aorta	Aorta
17	chr11:107661800-107680600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:107661800-107685800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:107661800-107691800	Weak transcription	Esophagus	oesophagus
20	chr11:107662000-107674400	Weak transcription	Adipose Nuclei	Adipose
21	chr11:107662200-107681000	Weak transcription	Hela-S3	cervix
22	chr11:107662400-107675800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:107662400-107682800	Weak transcription	Pancreas	Pancrea
24	chr11:107662400-107686400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:107662800-107683800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:107663000-107682800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:107663000-107683400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:107663000-107683600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:107663200-107684200	Weak transcription	HepG2	liver
30	chr11:107663200-107690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:107663600-107676000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:107663600-107679000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:107663600-107682200	Weak transcription	Ovary	ovary
34	chr11:107664000-107672200	Weak transcription	Fetal Intestine Small	intestine
35	chr11:107664000-107676400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:107664200-107673000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr11:107664200-107673200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:107664400-107673200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:107664600-107683800	Weak transcription	Stomach Mucosa	stomach
40	chr11:107664600-107686000	Weak transcription	Gastric	stomach
41	chr11:107665200-107675800	Weak transcription	NHEK	skin
42	chr11:107665400-107675000	Weak transcription	A549	lung
43	chr11:107665800-107675800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:107666000-107671200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:107666000-107672200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:107666000-107673200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:107666200-107671200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:107666200-107671200	Weak transcription	GM12878-XiMat	blood
49	chr11:107666200-107673000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:107666200-107680600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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