Variant report
Variant | nsv826466 |
---|---|
Chromosome Location | chr12:85547493-85548816 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | POLR2A | chr12:85547891-85548067 | MCF10A-Er-Src | breast: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
LRRIQ1 | TF binding region |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs536902564 | chr12:85547812-85547813 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
2 | rs186667018 | chr12:85547835-85547836 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
3 | rs193214509 | chr12:85547850-85547851 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
4 | rs370379672 | chr12:85547887-85547888 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
5 | rs374099716 | chr12:85547904-85547905 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
6 | rs529677472 | chr12:85547909-85547910 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
7 | rs185722429 | chr12:85547923-85547924 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
8 | rs558554435 | chr12:85547938-85547939 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
9 | rs576913554 | chr12:85547947-85547948 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
10 | rs145519822 | chr12:85547986-85547987 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
11 | rs548060434 | chr12:85548018-85548019 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
12 | rs57830834 | chr12:85548020-85548021 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
13 | rs566398717 | chr12:85548038-85548039 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
14 | rs139515514 | chr12:85548048-85548049 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
15 | rs552724466 | chr12:85548060-85548061 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
16 | rs527594777 | chr12:85548071-85548072 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
17 | rs200995185 | chr12:85548076-85548077 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
18 | rs201646134 | chr12:85548077-85548078 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
19 | rs200446638 | chr12:85548081-85548082 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
20 | rs398040012 | chr12:85548082-85548083 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
21 | rs542068327 | chr12:85548083-85548084 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
22 | rs563427484 | chr12:85548107-85548108 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
23 | rs188568883 | chr12:85548184-85548185 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
24 | rs145236285 | chr12:85548186-85548187 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
25 | rs564086624 | chr12:85548220-85548221 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
26 | rs74114211 | chr12:85548373-85548374 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
27 | rs115442419 | chr12:85548410-85548411 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
28 | rs570626475 | chr12:85548438-85548439 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
29 | rs147613901 | chr12:85548495-85548496 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
30 | rs61539171 | chr12:85548643-85548644 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
31 | rs112654433 | chr12:85548698-85548699 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
32 | rs548807978 | chr12:85548704-85548705 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
33 | rs570228585 | chr12:85548708-85548709 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
34 | rs537780390 | chr12:85548713-85548714 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Wilms tumour | 21544195 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Lung cancer | 20668451 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
Chronic lymphocytic leukemia | 22228453 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Chronic lymphocytic leukemia | 21670202 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Autism | 22495311 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 21949216 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Cancer | 21637783 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 17899364 | CNVD |
Cancer | 16751803 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Melanoma | 18172304 | CNVD |
Glioblastoma multiforme | 21390271 | CNVD |
Cancer | 20164919 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Gastrointestinal stromal cancer | 20877625 | CNVD |
abnormal development | 18461090 | CNVD |
Prostate cancer | 18632612 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Breast cancer | 22032731 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Breast cancer | 21364760 | CNVD |
Cancer | 20164920 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:85547800-85550000 | Active TSS | Fetal Kidney | kidney |