Variant report
Variant | nsv826624 |
---|---|
Chromosome Location | chr13:39933627-39935533 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs75610903 | chr13:39933640-39933641 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs556179223 | chr13:39933641-39933642 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs192078296 | chr13:39933663-39933664 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs185288447 | chr13:39933676-39933677 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs576723062 | chr13:39933687-39933688 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs570050461 | chr13:39933748-39933749 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs555904911 | chr13:39933788-39933789 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs190217607 | chr13:39933809-39933810 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs78421310 | chr13:39933826-39933827 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs182438930 | chr13:39933832-39933833 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs577921846 | chr13:39933842-39933843 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs543517644 | chr13:39933890-39933891 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs558845040 | chr13:39933898-39933899 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs376130123 | chr13:39933903-39933904 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs117723747 | chr13:39933920-39933921 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs142026278 | chr13:39933928-39933929 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs80044033 | chr13:39933937-39933938 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs77517664 | chr13:39933938-39933939 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs530422999 | chr13:39933947-39933948 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs541721072 | chr13:39933991-39933992 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs184181374 | chr13:39934015-39934016 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs6563698 | chr13:39934077-39934078 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
23 | rs548009891 | chr13:39934081-39934082 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs189404736 | chr13:39934088-39934089 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs527631356 | chr13:39934089-39934090 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs547668262 | chr13:39934109-39934110 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs570357926 | chr13:39934115-39934116 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs114544348 | chr13:39934144-39934145 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs574606226 | chr13:39934147-39934148 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs562549417 | chr13:39934148-39934149 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs549920658 | chr13:39934173-39934174 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs569792610 | chr13:39934186-39934187 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs7999083 | chr13:39934189-39934190 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs11321233 | chr13:39934198-39934199 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs375335643 | chr13:39934200-39934201 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs61945280 | chr13:39934204-39934205 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs8001260 | chr13:39934219-39934220 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs8000602 | chr13:39934220-39934221 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs8000604 | chr13:39934226-39934227 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs1177831 | chr13:39934227-39934228 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs1184658 | chr13:39934236-39934237 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs59927895 | chr13:39934237-39934238 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
43 | rs61945281 | chr13:39934239-39934240 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs61945282 | chr13:39934243-39934244 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs1175915 | chr13:39934251-39934252 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs61945283 | chr13:39934260-39934261 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs61945284 | chr13:39934261-39934262 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs61945285 | chr13:39934263-39934264 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
49 | rs61469513 | chr13:39934273-39934274 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
50 | rs61945287 | chr13:39934277-39934278 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Cancer | 20164920 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Prostate cancer | 16705090 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Cancer | 20164919 | CNVD |
Autism | 22495311 | CNVD |
Lung cancer | 18438408 | CNVD |
Chordoma | 21602918 | CNVD |
Bladder cancer | 21949216 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Chronic lymphocytic leukemia | 21518781 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Intracranial aneurysm | 19064780 | CNVD |
Breast cancer | 19287154 | CNVD |
Acute myeloid leukemia | 18379011 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Ependymoma | 16718352 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Breast cancer | 17899364 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Myoepithelioma | 18604193 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Prostate cancer | 16573809 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Trisomy | 24170809 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Alveolar rhabdomyosarcoma | 16790082 | CNVD |
Breast cancer | 21785460 | CNVD |
Prostate cancer | 18632612 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Paraganglioma | 21461997 | CNVD |
Pheochromocytoma | 21461997 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Monoclonal gammopathy of undetermined significance | 19135901 | CNVD |
Prostate cancer | 19242612 | CNVD |
Prostate cancer | 17245344 | CNVD |
Colorectal cancer | 21586687 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Retinoblastoma | 19183342 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Developmental delay | 21147756 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Melanoma | 18172304 | CNVD |
Congenital anomalies of the kidney and urinary tract | 20467480 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Prostate cancer | 17217626 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Chronic lymphocytic leukemia | 21795749 | CNVD |
Chronic lymphocytic leukemia | 17805327 | CNVD |
Mental retardation | 17502991 | CNVD |
Retinoblastoma | 17502991 | CNVD |
Bipolar disorder | 18458673 | CNVD |
Liposarcoma | 21253554 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Cervical cancer | 21062161 | CNVD |
microdeletion syndrome | 19284877 | CNVD |
Ovarian cancer | 22355333 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:39925200-39936800 | Weak transcription | Brain Cingulate Gyrus | brain |
2 | chr13:39925200-39938600 | Weak transcription | Aorta | Aorta |
3 | chr13:39928400-39936400 | Weak transcription | Left Ventricle | heart |
4 | chr13:39928400-39939000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
5 | chr13:39928400-39939000 | Weak transcription | Right Atrium | heart |
6 | chr13:39928800-39938800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
7 | chr13:39929200-39938800 | Weak transcription | Fetal Heart | heart |
8 | chr13:39933400-39933800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
9 | chr13:39933600-39936400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
10 | chr13:39933800-39937000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |