Variant report

Variant	nsv827336
Chromosome Location	chr15:54445345-54447784
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562589651	chr15:54445357-54445358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533154527	chr15:54445361-54445362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376457675	chr15:54445366-54445367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550724898	chr15:54445384-54445385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs527977463	chr15:54445403-54445404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs541582716	chr15:54445410-54445411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184367052	chr15:54445447-54445448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs11071050	chr15:54445459-54445460	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs542741301	chr15:54445512-54445513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs67734315	chr15:54445518-54445519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs71132784	chr15:54445521-54445522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs562510218	chr15:54445534-54445535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs531293604	chr15:54445537-54445538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs78711736	chr15:54445603-54445604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34091542	chr15:54445691-54445692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs28416823	chr15:54445697-54445698	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs186808033	chr15:54445723-54445724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs371882584	chr15:54445738-54445739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1897061	chr15:54445767-54445768	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs2115832	chr15:54445768-54445769	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs192444914	chr15:54445776-54445777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2115831	chr15:54445788-54445789	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs7175388	chr15:54445801-54445802	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs559005766	chr15:54445818-54445819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs572735582	chr15:54445858-54445859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs1897060	chr15:54445985-54445986	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs555191432	chr15:54446016-54446017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs575078633	chr15:54446033-54446034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535776280	chr15:54446060-54446061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs115652070	chr15:54446063-54446064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556265272	chr15:54446295-54446296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139228561	chr15:54446327-54446328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs545021959	chr15:54446342-54446343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs184733730	chr15:54446389-54446390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564704169	chr15:54446424-54446425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527628741	chr15:54446456-54446457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs188746737	chr15:54446457-54446458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145031619	chr15:54446461-54446462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs151325024	chr15:54446463-54446464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs60622945	chr15:54446471-54446472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs560756392	chr15:54446491-54446492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12916905	chr15:54446522-54446523	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs549886502	chr15:54446583-54446584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs149959715	chr15:54446594-54446595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs117132972	chr15:54446600-54446601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs552571899	chr15:54446617-54446618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs570304737	chr15:54446672-54446673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370113089	chr15:54446698-54446699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs181613120	chr15:54446699-54446700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs184618873	chr15:54446711-54446712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Urothelial carcinoma	21177765	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54432200-54451200	Weak transcription	Fetal Lung	lung
2	chr15:54441800-54453200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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