Variant report

Variant	nsv827426
Chromosome Location	chr15:87577468-87578633
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:169 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs374430507	chr15:87577481-87577482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs116935208	chr15:87577498-87577499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs527834502	chr15:87577525-87577526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567585039	chr15:87577555-87577556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs530690298	chr15:87577581-87577582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs376589002	chr15:87577615-87577616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548845852	chr15:87577650-87577651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs554432750	chr15:87577660-87577661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs534806918	chr15:87577672-87577673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549152395	chr15:87577685-87577686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs553238449	chr15:87577689-87577690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571669024	chr15:87577692-87577693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs539045714	chr15:87577697-87577698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs55679365	chr15:87577721-87577722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs55881229	chr15:87577732-87577733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557357235	chr15:87577745-87577746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138963009	chr15:87577752-87577753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs148345855	chr15:87577757-87577758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552568674	chr15:87577760-87577761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs577269157	chr15:87577799-87577800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs543371083	chr15:87577833-87577834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs142869482	chr15:87577856-87577857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs74518823	chr15:87577889-87577890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs79045466	chr15:87577893-87577894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573396003	chr15:87577896-87577897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs141315110	chr15:87577921-87577922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs74640892	chr15:87577923-87577924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs76332672	chr15:87577924-87577925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs78299381	chr15:87577927-87577928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs540814985	chr15:87577928-87577929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs78058032	chr15:87577929-87577930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs375499712	chr15:87577930-87577931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs28685219	chr15:87577932-87577933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs559183842	chr15:87577935-87577936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201082628	chr15:87577937-87577938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201690847	chr15:87577939-87577940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs75372843	chr15:87577941-87577942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs75249259	chr15:87577942-87577943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs75318747	chr15:87577943-87577944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs77820847	chr15:87577944-87577945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs78000233	chr15:87577947-87577948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs533426658	chr15:87577948-87577949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs533003367	chr15:87577949-87577950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs55929502	chr15:87577950-87577951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs112635782	chr15:87577954-87577955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs141548247	chr15:87577959-87577960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs67568157	chr15:87577960-87577961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113883550	chr15:87577970-87577971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs202194898	chr15:87577973-87577974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs544628649	chr15:87577975-87577976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21364760	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Spondylocostal dysostosis	21085971	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	17237825	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87575800-87579000	Weak transcription	Brain Substantia Nigra	brain
2	chr15:87576000-87579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:87576000-87581200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:87576400-87579400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:87577000-87579200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:87577200-87578800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:87577400-87579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:87577800-87581400	Weak transcription	Placenta Amnion	Placenta Amnion

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