Variant report

Variant	nsv827436
Chromosome Location	chr15:93269669-93270582
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140788241	chr15:93269739-93269740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541592485	chr15:93269740-93269741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs1971808	chr15:93269798-93269799	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs138572462	chr15:93269806-93269807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140217078	chr15:93269875-93269876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs116842717	chr15:93269882-93269883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537166732	chr15:93269907-93269908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs555245868	chr15:93269918-93269919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs533323992	chr15:93269931-93269932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1545143	chr15:93269940-93269941	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs570334427	chr15:93269960-93269961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs191956824	chr15:93270014-93270015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs150340722	chr15:93270024-93270025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs138039441	chr15:93270051-93270052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs555097023	chr15:93270065-93270066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs183696386	chr15:93270072-93270073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189188469	chr15:93270074-93270075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs111855831	chr15:93270092-93270093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs189623281	chr15:93270103-93270104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs149524042	chr15:93270127-93270128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539021653	chr15:93270190-93270191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs8028966	chr15:93270220-93270221	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs575967982	chr15:93270263-93270264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs35711621	chr15:93270264-93270265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs541697614	chr15:93270318-93270319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7167675	chr15:93270322-93270323	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs138965019	chr15:93270326-93270327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7166307	chr15:93270351-93270352	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs564558186	chr15:93270391-93270392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs142978462	chr15:93270400-93270401	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs528028291	chr15:93270424-93270425	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs563652048	chr15:93270446-93270447	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs529662225	chr15:93270449-93270450	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs55742608	chr15:93270532-93270533	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs566151775	chr15:93270533-93270534	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs8033632	chr15:93270538-93270539	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs74031211	chr15:93270561-93270562	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93258200-93277000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93258200-93277000	Weak transcription	Left Ventricle	heart
3	chr15:93258400-93277000	Weak transcription	Ovary	ovary
4	chr15:93258600-93277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:93258800-93277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:93258800-93277000	Weak transcription	Fetal Brain Male	brain
7	chr15:93264400-93276600	Weak transcription	Fetal Kidney	kidney
8	chr15:93267600-93277000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:93267600-93277000	Weak transcription	Right Ventricle	heart
10	chr15:93268800-93270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:93270400-93270600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:93270400-93272800	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links