Variant report

Variant	nsv827985
Chromosome Location	chr17:37617508-37619261
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:573)
CpG islands
(count:671)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:573 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr17:37617237-37617996	HepG2	liver:	n/a	n/a
2	ATF1	chr17:37617434-37617880	K562	blood:	n/a	n/a
3	ATF2	chr17:37617314-37617968	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr17:37617278-37618056	GM12878	blood:	n/a	n/a
5	ATF2	chr17:37617329-37618114	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr17:37617268-37618008	GM12878	blood:	n/a	n/a
7	ATF3	chr17:37617283-37618037	A549	lung:	n/a	n/a
8	ATF3	chr17:37617260-37617956	A549	lung:	n/a	n/a
9	ATF3	chr17:37617341-37617614	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF3	chr17:37617304-37617862	K562	blood:	n/a	n/a
11	BATF	chr17:37617406-37617860	GM12878	blood:	n/a	n/a
12	BCL3	chr17:37617271-37618217	A549	lung:	n/a	chr17:37617996-37618005
13	BCL3	chr17:37618248-37619573	A549	lung:	n/a	n/a
14	BCL3	chr17:37617258-37618231	A549	lung:	n/a	chr17:37617996-37618005
15	BCLAF1	chr17:37617321-37618213	GM12878	blood:	n/a	chr17:37617996-37618005
16	BCLAF1	chr17:37617316-37618062	GM12878	blood:	n/a	chr17:37617996-37618005
17	BHLHE40	chr17:37617335-37617999	GM12878	blood:	n/a	chr17:37617977-37617993
18	BRCA1	chr17:37618643-37618839	GM12878	blood:	n/a	n/a
19	BRCA1	chr17:37617346-37618099	HepG2	liver:	n/a	chr17:37617678-37617687 chr17:37617584-37617593
20	BRCA1	chr17:37617318-37618188	H1-hESC	embryonic stem cell:	n/a	chr17:37617678-37617687 chr17:37617584-37617593
21	BRCA1	chr17:37617365-37618123	GM12878	blood:	n/a	chr17:37617678-37617687 chr17:37617584-37617593
22	BRCA1	chr17:37617300-37618265	Hela-S3	cervix:	n/a	chr17:37617678-37617687 chr17:37617584-37617593
23	CBX3	chr17:37617266-37618232	K562	blood:	n/a	n/a
24	CBX3	chr17:37617218-37617909	K562	blood:	n/a	n/a
25	CCNT2	chr17:37617450-37618155	K562	blood:	n/a	chr17:37617722-37617731
26	CEBPB	chr17:37617292-37618055	GM12878	blood:	n/a	n/a
27	CEBPB	chr17:37617315-37618037	A549	lung:	n/a	n/a
28	CEBPB	chr17:37617300-37617853	K562	blood:	n/a	n/a
29	CEBPD	chr17:37617350-37618069	K562	blood:	n/a	n/a
30	CEBPD	chr17:37617470-37617871	HepG2	liver:	n/a	n/a
31	CEBPD	chr17:37617522-37618226	HepG2	liver:	n/a	n/a
32	CHD1	chr17:37617398-37618188	GM12878	blood:	n/a	chr17:37617722-37617732 chr17:37617584-37617593 chr17:37617678-37617687 chr17:37617699-37617708
33	CHD1	chr17:37618433-37618809	GM12878	blood:	n/a	n/a
34	CHD2	chr17:37617282-37618730	Hela-S3	cervix:	n/a	chr17:37617722-37617732 chr17:37617584-37617593 chr17:37617678-37617687 chr17:37617699-37617708
35	CHD2	chr17:37617298-37618243	K562	blood:	n/a	chr17:37617722-37617732 chr17:37617584-37617593 chr17:37617678-37617687 chr17:37617699-37617708
36	CHD2	chr17:37617320-37618531	HepG2	liver:	n/a	chr17:37617722-37617732 chr17:37617584-37617593 chr17:37617678-37617687 chr17:37617699-37617708
37	CHD2	chr17:37617292-37618661	GM12878	blood:	n/a	chr17:37617722-37617732 chr17:37617584-37617593 chr17:37617678-37617687 chr17:37617699-37617708
38	CHD2	chr17:37617318-37618340	H1-hESC	embryonic stem cell:	n/a	chr17:37617722-37617732 chr17:37617584-37617593 chr17:37617678-37617687 chr17:37617699-37617708
39	CREB1	chr17:37617336-37618268	A549	lung:	n/a	n/a
40	CREB1	chr17:37617430-37617871	A549	lung:	n/a	n/a
41	CREB1	chr17:37617314-37618101	H1-hESC	embryonic stem cell:	n/a	n/a
42	CREB1	chr17:37617318-37618358	GM12878	blood:	n/a	n/a
43	CTCF	chr17:37617607-37617666	Kidney_OC	kidney:	n/a	n/a
44	CTCF	chr17:37618386-37618465	GM19240	blood:	n/a	n/a
45	CTCF	chr17:37619200-37619350	HepG2	liver:	n/a	n/a
46	CTCF	chr17:37618367-37618462	GM12892	blood:	n/a	n/a
47	CTCF	chr17:37617478-37617824	GM12878	blood:	n/a	n/a
48	CTCF	chr17:37617405-37617872	K562	blood:	n/a	n/a
49	CTCF	chr17:37618980-37619130	GM12871	blood:	n/a	n/a
50	CTCF	chr17:37618401-37618459	GM19239	blood:	n/a	n/a

(count:671 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:37617704-37617754	K562	blood:	n/a
2	chr17:37617470-37617520	AG09309	skin:	n/a
3	chr17:37618682-37618732	SAEC	small airway:	n/a
4	chr17:37617470-37617520	NH-A	brain:	n/a
5	chr17:37617532-37617582	AoSMC	blood vessel:	n/a
6	chr17:37618044-37618094	ECC-1	luminal epithelium:	n/a
7	chr17:37618454-37618504	SAEC	small airway:	n/a
8	chr17:37617704-37617754	HCM	heart:	n/a
9	chr17:37618044-37618094	Caco-2	colon:	n/a
10	chr17:37618682-37618732	HCF	heart:	n/a
11	chr17:37617704-37617754	T-47D	breast:	n/a
12	chr17:37618498-37618548	AG04450	lung:	fetal
13	chr17:37618044-37618094	AoSMC	blood vessel:	n/a
14	chr17:37617470-37617520	NHDF-neo	bronchial:	n/a
15	chr17:37617673-37617723	CMK	blood:	n/a
16	chr17:37617702-37617752	AG09309	skin:	n/a
17	chr17:37617470-37617520	Hela-S3	cervix:	n/a
18	chr17:37617607-37617657	SKMC	muscle:	n/a
19	chr17:37617607-37617657	SK-N-SH_RA	brain:	n/a
20	chr17:37618682-37618732	GM19239	blood:	n/a
21	chr17:37618454-37618504	GM12892	blood:	n/a
22	chr17:37617532-37617582	GM19239	blood:	n/a
23	chr17:37617532-37617582	PFSK-1	brain:	n/a
24	chr17:37618498-37618548	GM12892	blood:	n/a
25	chr17:37617704-37617754	NB4	blood:	n/a
26	chr17:37617707-37617757	U87	brain:	n/a
27	chr17:37617673-37617723	PFSK-1	brain:	n/a
28	chr17:37618044-37618094	MCF-7	breast:	n/a
29	chr17:37617470-37617520	T-47D	breast:	n/a
30	chr17:37617707-37617757	AG10803	skin:	n/a
31	chr17:37617673-37617723	NB4	blood:	n/a
32	chr17:37617470-37617520	PrEC	prostate:	n/a
33	chr17:37618454-37618504	Jurkat	blood:	n/a
34	chr17:37617532-37617582	PANC-1	pancreas:	n/a
35	chr17:37618044-37618094	HRCEpiC	kidney:	n/a
36	chr17:37617470-37617520	HepG2	liver:	n/a
37	chr17:37617607-37617657	A549	lung:	n/a
38	chr17:37618454-37618504	SKMC	muscle:	n/a
39	chr17:37618498-37618548	NHDF-neo	bronchial:	n/a
40	chr17:37617607-37617657	AG09319	gingival:	n/a
41	chr17:37617702-37617752	HAEpiC	amniotic membrane:	n/a
42	chr17:37617707-37617757	PFSK-1	brain:	n/a
43	chr17:37618682-37618732	BE2_C	brain:	n/a
44	chr17:37617673-37617723	SKMC	muscle:	n/a
45	chr17:37617470-37617520	HEK293	kidney:	embryo
46	chr17:37618044-37618094	NT2-D1	testis:	n/a
47	chr17:37618044-37618094	K562	blood:	n/a
48	chr17:37617707-37617757	GM12878	blood:	n/a
49	chr17:37618454-37618504	SK-N-MC	brain:	n/a
50	chr17:37617673-37617723	HRCEpiC	kidney:	n/a

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37618970..37621039-chr17:37622079..37624596,3	MCF-7	breast:
2	chr17:37605291..37610010-chr17:37614517..37620203,14	MCF-7	breast:
3	chr17:37615177..37617856-chr19:59063174..59065856,2	MCF-7	breast:
4	chr17:37617160..37618090-chr8:132915947..132916726,2	NB4	blood:
5	chr17:37618876..37620514-chr17:37643211..37645194,2	K562	blood:
6	chr17:37558046..37560513-chr17:37618959..37620951,2	MCF-7	breast:
7	chr17:37604313..37610125-chr17:37615155..37621784,15	MCF-7	breast:
8	chr17:37618143..37619804-chr17:37685071..37687650,2	K562	blood:
9	chr17:37353026..37355461-chr17:37616658..37619340,2	MCF-7	breast:
10	chr10:74385336..74386205-chr17:37617909..37618616,2	Hela-S3	cervix:
11	chr17:37617317..37618153-chr5:40834782..40835378,3	Hela-S3	cervix:
12	chr17:37618391..37620172-chr17:37870327..37873134,2	K562	blood:
13	chr17:37617575..37619643-chr17:37685798..37687650,2	K562	blood:
14	chr17:37617615..37618129-chr17:56708677..56709544,2	Hela-S3	cervix:
15	chr17:37556913..37559429-chr17:37617747..37620632,2	K562	blood:
16	chr15:50274598..50275298-chr17:37617590..37618180,2	NB4	blood:
17	chr17:37618068..37618935-chr3:172468522..172469137,2	Hela-S3	cervix:
18	chr17:37604386..37611889-chr17:37616048..37620931,25	K562	blood:
19	chr17:37399360..37401655-chr17:37617995..37620888,2	K562	blood:
20	chr17:37604291..37611614-chr17:37614953..37621274,26	K562	blood:
21	chr17:37617445..37618229-chr3:58419043..58419552,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
CDK12	TF binding region
CDK12	CpG island
ENSG00000125686	chromatin interactions
ENSG00000108306	chromatin interactions
ENSG00000132294	chromatin interactions
ENSG00000168291	chromatin interactions
ENSG00000130724	chromatin interactions
ENSG00000114346	chromatin interactions
ENSG00000201086	chromatin interactions
ENSG00000107745	chromatin interactions
ENSG00000167258	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000266469	chromatin interactions
ENSG00000141736	chromatin interactions
ENSG00000067191	chromatin interactions
ENSG00000265460	chromatin interactions
ENSG00000145592	chromatin interactions

Extended variants
information (count: 70 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547286990	chr17:37617556-37617557	Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
2	rs573596874	chr17:37617566-37617567	Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
3	rs117978442	chr17:37617630-37617631	Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
4	rs556226613	chr17:37617648-37617649	Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
5	rs577660953	chr17:37617653-37617654	Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
6	rs544841495	chr17:37617734-37617735	Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
7	rs559896613	chr17:37617745-37617746	Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
8	rs572035299	chr17:37617762-37617763	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
9	rs536022483	chr17:37617764-37617765	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
10	rs530224947	chr17:37617786-37617787	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
11	rs373968044	chr17:37617789-37617790	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
12	rs560817341	chr17:37617793-37617794	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
13	rs531741634	chr17:37617800-37617801	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
14	rs549862718	chr17:37617867-37617868	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
15	rs187164282	chr17:37617919-37617920	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
16	rs532491020	chr17:37617921-37617922	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
17	rs370074587	chr17:37617974-37617975	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
18	rs548046356	chr17:37618016-37618017	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
19	rs566256422	chr17:37618017-37618018	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
20	rs141020897	chr17:37618122-37618123	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
21	rs548907071	chr17:37618140-37618141	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
22	rs566968995	chr17:37618158-37618159	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
23	rs570207748	chr17:37618179-37618180	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
24	rs537892932	chr17:37618203-37618204	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
25	rs192819848	chr17:37618220-37618221	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
26	rs377332488	chr17:37618252-37618253	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
27	rs372744911	chr17:37618277-37618278	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
28	rs376274141	chr17:37618289-37618290	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
29	rs183690426	chr17:37618305-37618306	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
30	rs144433454	chr17:37618357-37618358	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
31	rs538322777	chr17:37618391-37618392	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
32	rs376924002	chr17:37618444-37618445	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs553421553	chr17:37618467-37618468	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs571927153	chr17:37618471-37618472	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs542375286	chr17:37618480-37618481	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs147398865	chr17:37618490-37618491	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs34303030	chr17:37618499-37618500	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs561243282	chr17:37618509-37618510	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs150124402	chr17:37618558-37618559	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
40	rs543840788	chr17:37618570-37618571	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
41	rs145123537	chr17:37618584-37618585	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
42	rs147574732	chr17:37618591-37618592	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
43	rs149034064	chr17:37618595-37618596	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
44	rs541561206	chr17:37618620-37618621	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
45	rs200703770	chr17:37618671-37618672	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
46	rs377586655	chr17:37618694-37618695	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
47	rs373315719	chr17:37618703-37618704	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
48	rs188667797	chr17:37618722-37618723	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
49	rs558704332	chr17:37618736-37618737	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
50	rs142040871	chr17:37618737-37618738	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ewing''s sarcoma	21437220	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Melanoma	18172304	CNVD
Moyamoya disease	22323933	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell lymphomas	19863542	CNVD
Cancer	16751803	CNVD
Chordoma	21602918	CNVD
Neurofibromatosis	20686819	CNVD
Peripheral nerve sheath tumors	20686819	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	17897457	CNVD
Neuroblastoma	17327916	CNVD
Breast cancer	21264507	CNVD
Endometrial cancer	22040021	CNVD
Neuroblastoma	21484798	CNVD
Breast cancer	22028636	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute myeloid leukemia	20724749	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17157792	CNVD
Bladder cancer	19088036	CNVD
Gastric cancer	17167181	CNVD
Breast cancer	19287154	CNVD
Leukemia	20874852	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Neuroblastoma	18664255	CNVD
Neuroblastoma	17533364	CNVD
Human rectal carcinomas	16397240	CNVD
Meningioma	19431122	CNVD
Neurocytoma	17123091	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastric cancer	24379144	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16785998	CNVD
Breast cancer	17850661	CNVD
Primary lung adenocarcinoma	16799635	CNVD
HIV/AIDS	18848619	CNVD
Rheumatoid arthritis	19220326	CNVD
Rheumatoid arthritis	18848619	CNVD
Systemic lupus erythematosus	19220326	CNVD
Systemic lupus erythematosus	18848619	CNVD
Type 1 diabetes	19220326	CNVD
HIV/AIDS	17330138	CNVD
Basal cell lymphoma	17053054	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Acute monocytic leukemia	16498392	CNVD
Breast cancer	20409316	CNVD
Myelodysplastic syndrome	18663149	CNVD
Breast cancer	17457667	CNVD
Breast cancer	16951389	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16620391	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22048815	CNVD
Breast cancer	17603634	CNVD
Follicular lymphoma	20505157	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	20953835	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Sezary syndrome	18413736	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:182 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37616800-37619200	Active TSS	Brain Hippocampus Middle	brain
2	chr17:37616800-37619200	Active TSS	A549	lung
3	chr17:37616800-37619600	Active TSS	Brain Anterior Caudate	brain
4	chr17:37616800-37620400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:37616800-37620400	Active TSS	Stomach Smooth Muscle	stomach
6	chr17:37617000-37617800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:37617000-37618400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:37617000-37618400	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr17:37617000-37618400	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr17:37617000-37618600	Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr17:37617000-37618600	Active TSS	Adipose Nuclei	Adipose
12	chr17:37617000-37618800	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr17:37617000-37618800	Active TSS	Duodenum Mucosa	Duodenum
14	chr17:37617000-37618800	Active TSS	Thymus	Thymus
15	chr17:37617000-37619000	Active TSS	Brain Substantia Nigra	brain
16	chr17:37617000-37619000	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr17:37617000-37619400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:37617000-37619400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr17:37617000-37619600	Active TSS	Monocytes-CD14+_RO01746	blood
20	chr17:37617000-37619800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:37617000-37619800	Active TSS	Colon Smooth Muscle	Colon
22	chr17:37617000-37619800	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr17:37617000-37620000	Active TSS	Fetal Kidney	kidney
24	chr17:37617000-37620000	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr17:37617000-37620000	Active TSS	Hela-S3	cervix
26	chr17:37617000-37620000	Active TSS	K562	blood
27	chr17:37617000-37620200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr17:37617000-37620200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:37617000-37620200	Active TSS	HSMM	muscle
30	chr17:37617000-37620200	Active TSS	Osteobl	bone
31	chr17:37617000-37620400	Active TSS	Fetal Thymus	thymus
32	chr17:37617000-37620400	Active TSS	Psoas Muscle	Psoas
33	chr17:37617000-37620600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr17:37617000-37620600	Active TSS	NHDF-Ad	bronchial
35	chr17:37617000-37621000	Active TSS	Colonic Mucosa	Colon
36	chr17:37617000-37621000	Active TSS	Fetal Intestine Small	intestine
37	chr17:37617000-37621200	Active TSS	Fetal Intestine Large	intestine
38	chr17:37617200-37617600	Active TSS	Right Atrium	heart
39	chr17:37617200-37617800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr17:37617200-37617800	Active TSS	Brain Germinal Matrix	brain
41	chr17:37617200-37618400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr17:37617200-37618400	Active TSS	Primary B cells from cord blood	blood
43	chr17:37617200-37618400	Active TSS	Primary hematopoietic stem cells	blood
44	chr17:37617200-37618400	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr17:37617200-37618600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr17:37617200-37618800	Active TSS	Primary T cells from cord blood	blood
47	chr17:37617200-37618800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr17:37617200-37619000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr17:37617200-37619000	Active TSS	Brain Cingulate Gyrus	brain
50	chr17:37617200-37619200	Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links