Variant report

Variant	nsv828177
Chromosome Location	chr18:9743875-9754292
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9709717..9711927-chr18:9749957..9752685,2	K562	blood:
2	chr18:9742831..9745591-chr18:9750609..9753499,2	K562	blood:
3	chr18:9744137..9746832-chr18:9760873..9762598,2	K562	blood:
4	chr18:9726328..9728477-chr18:9753850..9756440,2	K562	blood:
5	chr18:9742066..9744058-chr18:9912319..9915888,3	K562	blood:
6	chr18:9742831..9745591-chr18:9750609..9753499,2	K562	blood:
7	chr18:9731963..9738554-chr18:9740350..9745076,12	MCF-7	breast:
8	chr18:9743405..9745081-chr18:9803596..9805288,2	K562	blood:
9	chr18:9740906..9743732-chr18:9749016..9751277,2	K562	blood:
10	chr18:9745938..9748130-chr18:9753763..9755422,2	K562	blood:
11	chr18:9752235..9755136-chr18:9913982..9916846,2	K562	blood:
12	chr18:9743400..9743997-chr22:39916154..39916657,2	Hela-S3	cervix:
13	chr18:9742614..9745446-chr18:9869217..9871460,2	K562	blood:
14	chr18:9742128..9744122-chr18:9913987..9916976,3	MCF-7	breast:
15	chr18:9742631..9745284-chr18:9756089..9758179,2	MCF-7	breast:
16	chr18:9658659..9661626-chr18:9743254..9745822,2	K562	blood:
17	chr18:9745938..9748130-chr18:9753763..9755422,2	K562	blood:
18	chr18:9742561..9744290-chr18:9751696..9753226,2	MCF-7	breast:
19	chr18:9706059..9708947-chr18:9745597..9749109,3	MCF-7	breast:
20	chr18:9747038..9748943-chr18:9749027..9751835,2	K562	blood:
21	chr18:9742662..9744377-chr18:9770072..9773067,3	K562	blood:
22	chr18:9751432..9753305-chr18:9757309..9758944,2	MCF-7	breast:
23	chr18:9742561..9744290-chr18:9751696..9753226,2	MCF-7	breast:
24	chr18:9578277..9581617-chr18:9743011..9745983,3	K562	blood:
25	chr18:9743133..9745591-chr18:9751999..9754524,3	K562	blood:
26	chr18:9743740..9745947-chr18:9746216..9749165,3	K562	blood:
27	chr18:9743133..9745591-chr18:9751999..9754524,3	K562	blood:
28	chr18:9707138..9711181-chr18:9753549..9757373,4	MCF-7	breast:
29	chr18:9743764..9745565-chr18:9913039..9915568,2	MCF-7	breast:
30	chr18:9707781..9712452-chr18:9739628..9745256,6	K562	blood:
31	chr18:9741489..9744706-chr18:9745971..9750071,5	MCF-7	breast:
32	chr18:9720136..9722151-chr18:9751810..9753463,2	K562	blood:
33	chr18:9741875..9744095-chr18:9783769..9785460,2	K562	blood:
34	chr18:9741767..9745758-chr18:9756519..9760010,5	MCF-7	breast:
35	chr18:9741489..9744706-chr18:9745971..9750071,5	MCF-7	breast:
36	chr18:9743740..9745947-chr18:9746216..9749165,3	K562	blood:
37	chr18:9740906..9742512-chr18:9748438..9750516,2	K562	blood:
38	chr18:9747038..9748943-chr18:9749027..9751835,2	K562	blood:
39	chr18:9709717..9711665-chr18:9750469..9752685,2	K562	blood:
40	chr18:9743211..9744889-chr18:9877031..9879316,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000101558	chromatin interactions
ENSG00000266127	chromatin interactions
ENSG00000128272	chromatin interactions
ENSG00000272799	chromatin interactions
ENSG00000266891	chromatin interactions
ENSG00000168461	chromatin interactions

Extended variants
information (count: 419 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:419 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs117626832	chr18:9743889-9743890	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs539376717	chr18:9743950-9743951	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs11662192	chr18:9743973-9743974	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs566360387	chr18:9744000-9744001	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs139917641	chr18:9744040-9744041	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs141789909	chr18:9744058-9744059	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs34917975	chr18:9744113-9744114	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs375964632	chr18:9744128-9744129	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs921837	chr18:9744152-9744153	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs921836	chr18:9744160-9744161	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs375965687	chr18:9744199-9744200	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs193087118	chr18:9744203-9744204	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs578245279	chr18:9744245-9744246	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs543394238	chr18:9744269-9744270	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs79524043	chr18:9744274-9744275	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs146329294	chr18:9744317-9744318	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs532815733	chr18:9744334-9744335	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs531437699	chr18:9744352-9744353	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs921835	chr18:9744353-9744354	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs540848277	chr18:9744359-9744360	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs148541953	chr18:9744378-9744379	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs142768151	chr18:9744394-9744395	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs543980858	chr18:9744460-9744461	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs151040201	chr18:9744474-9744475	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs139942536	chr18:9744487-9744488	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs551285079	chr18:9744546-9744547	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs2902842	chr18:9744579-9744580	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs527299385	chr18:9744582-9744583	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs185417353	chr18:9744583-9744584	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs189894543	chr18:9744585-9744586	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs35581945	chr18:9744640-9744641	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs537970018	chr18:9744676-9744677	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs192034807	chr18:9744800-9744801	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs144926690	chr18:9744829-9744830	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs147968719	chr18:9744834-9744835	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs184221220	chr18:9744842-9744843	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs4798839	chr18:9744866-9744867	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs542651027	chr18:9744921-9744922	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs141740517	chr18:9744971-9744972	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs576443693	chr18:9745034-9745035	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs138957511	chr18:9745060-9745061	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs4798840	chr18:9745061-9745062	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs532965088	chr18:9745084-9745085	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs544864037	chr18:9745086-9745087	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs11660654	chr18:9745129-9745130	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs527632973	chr18:9745156-9745157	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs75428418	chr18:9745258-9745259	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs75789005	chr18:9745260-9745261	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs548682567	chr18:9745297-9745298	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs145500462	chr18:9745306-9745307	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Acute myeloid leukemia	16864856	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Kartagener syndrome	16639409	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Cancer	21183584	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Human rectal carcinomas	16397240	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19150955	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
Breast cancer	21785460	CNVD
Autism	20808228	CNVD
lymphocytic leukemia	21291569	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
abnormal development	18461090	CNVD
Heart disease	21282601	CNVD
Glioblastoma multiforme	21922591	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute myeloid leukemia	17377590	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	18438408	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:283 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9738000-9744000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:9738200-9746000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr18:9739800-9744200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr18:9740000-9744200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:9740600-9744000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:9740800-9744000	Enhancers	Placenta	Placenta
7	chr18:9740800-9744400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:9741000-9744200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:9741400-9744000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:9741400-9744000	Enhancers	Esophagus	oesophagus
11	chr18:9741400-9744000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr18:9741400-9744400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr18:9741400-9744400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr18:9741400-9744400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr18:9741400-9744400	Enhancers	HSMM	muscle
16	chr18:9741600-9744000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr18:9741600-9744200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr18:9741600-9744400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr18:9741800-9744200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr18:9741800-9744200	Enhancers	NHLF	lung
21	chr18:9741800-9744400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr18:9741800-9744400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr18:9741800-9744400	Enhancers	HMEC	breast
24	chr18:9741800-9744600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr18:9741800-9744800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr18:9742000-9744200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr18:9742000-9744400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr18:9742000-9744600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr18:9742200-9744000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr18:9742200-9746600	Weak transcription	Colon Smooth Muscle	Colon
31	chr18:9742400-9744000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr18:9742400-9744000	Flanking Active TSS	K562	blood
33	chr18:9742600-9744000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr18:9742600-9744000	Flanking Active TSS	NHDF-Ad	bronchial
35	chr18:9742600-9744800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr18:9742600-9750000	Weak transcription	Spleen	Spleen
37	chr18:9742800-9744000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr18:9742800-9749800	Weak transcription	Fetal Muscle Leg	muscle
39	chr18:9742800-9754400	Weak transcription	Right Ventricle	heart
40	chr18:9743000-9744000	Enhancers	Brain Angular Gyrus	brain
41	chr18:9743000-9744000	Enhancers	Fetal Lung	lung
42	chr18:9743000-9744000	Flanking Active TSS	HepG2	liver
43	chr18:9743000-9744200	Enhancers	Primary B cells from cord blood	blood
44	chr18:9743000-9756200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr18:9743200-9744000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr18:9743200-9744000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:9743200-9744000	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr18:9743200-9744000	Enhancers	Primary hematopoietic stem cells	blood
49	chr18:9743200-9744000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr18:9743200-9744000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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