Variant report

Variant	nsv828508
Chromosome Location	chr19:23060141-23096482
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:23062117..23064489-chr8:12599332..12601414,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF99-1	chr19:23089888-23090041	ENSG00000268296.1
2	lnc-ZNF730-4	chr19:23083412-23083590	NONHSAT063827
3	lnc-ZNF99-1	chr19:23086798-23087004	XLOC_013270
4	lnc-ZNF99-1	chr19:23093696-23093759	ENSG00000268296.1
5	lnc-ZNF730-4	chr19:23083412-23083590	NONHSAT063828

No data

Variant related genes	Relation type
ENSG00000154359	chromatin interactions

Extended variants
information (count: 301 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:301 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554380276	chr19:23062135-23062136	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs116695660	chr19:23062205-23062206	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs139453808	chr19:23062214-23062215	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs183202398	chr19:23062226-23062227	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs58977014	chr19:23062229-23062230	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs34041981	chr19:23062233-23062234	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs6511388	chr19:23062248-23062249	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs149859052	chr19:23062279-23062280	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs377448372	chr19:23062284-23062285	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs562302605	chr19:23062335-23062336	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs187370161	chr19:23062343-23062344	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs35988202	chr19:23062344-23062345	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs548091747	chr19:23062378-23062379	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs563893184	chr19:23062418-23062419	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs565888439	chr19:23062459-23062460	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs545462465	chr19:23062467-23062468	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs192552114	chr19:23062476-23062477	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs540974956	chr19:23062530-23062531	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs183266889	chr19:23062546-23062547	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs558980138	chr19:23062601-23062602	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs201947550	chr19:23062613-23062614	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs368895769	chr19:23062617-23062618	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs199878933	chr19:23062618-23062619	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs74175715	chr19:23062684-23062685	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs11667539	chr19:23062691-23062692	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs567931655	chr19:23062733-23062734	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs75223509	chr19:23062817-23062818	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs554041404	chr19:23062833-23062834	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs561343744	chr19:23062844-23062845	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs187955212	chr19:23062908-23062909	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs539413979	chr19:23062949-23062950	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs192431545	chr19:23062968-23062969	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs184406017	chr19:23062984-23062985	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs543556493	chr19:23063035-23063036	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs35306223	chr19:23063044-23063045	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs562235458	chr19:23063057-23063058	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs574287031	chr19:23063072-23063073	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs189749182	chr19:23063076-23063077	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs192904684	chr19:23063174-23063175	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs533503311	chr19:23063181-23063182	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs574940081	chr19:23063205-23063206	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs561101452	chr19:23063206-23063207	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs556561017	chr19:23063225-23063226	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs563379328	chr19:23063231-23063232	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs370584183	chr19:23063269-23063270	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs34305301	chr19:23063285-23063286	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs115700670	chr19:23063294-23063295	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs184336682	chr19:23063330-23063331	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs535626457	chr19:23063379-23063380	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs550557994	chr19:23063454-23063455	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	23813976	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23062400-23063600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:23078600-23080200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:23082200-23083600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:23082800-23085000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr19:23083800-23084800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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