Variant report

Variant	nsv830611
Chromosome Location	chr6:25039374-25199112
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2174)
CpG islands
(count:1954)
Chromatin interactive
region (count:71)
LncRNA
region (count:31)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2174 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:25083970-25084401	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:25174113-25174516	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:25071092-25071355	HepG2	liver:	n/a	n/a
4	ATF1	chr6:25174158-25174449	K562	blood:	n/a	n/a
5	ATF1	chr6:25138444-25138722	K562	blood:	n/a	n/a
6	ATF2	chr6:25054084-25054662	GM12878	blood:	n/a	n/a
7	ATF2	chr6:25137739-25139485	GM12878	blood:	n/a	n/a
8	ATF2	chr6:25187062-25187518	GM12878	blood:	n/a	n/a
9	ATF2	chr6:25138138-25139054	GM12878	blood:	n/a	n/a
10	ATF2	chr6:25070929-25071399	GM12878	blood:	n/a	n/a
11	ATF2	chr6:25054043-25054647	GM12878	blood:	n/a	n/a
12	ATF2	chr6:25147259-25147841	GM12878	blood:	n/a	n/a
13	ATF2	chr6:25041093-25041774	GM12878	blood:	n/a	n/a
14	ATF3	chr6:25174197-25174463	K562	blood:	n/a	n/a
15	ATF3	chr6:25050583-25050982	K562	blood:	n/a	n/a
16	BACH1	chr6:25043379-25043525	K562	blood:	n/a	n/a
17	BACH1	chr6:25066950-25067017	H1-hESC	embryonic stem cell:	n/a	n/a
18	BATF	chr6:25174173-25174403	GM12878	blood:	n/a	chr6:25174288-25174299
19	BATF	chr6:25054032-25054623	GM12878	blood:	n/a	n/a
20	BATF	chr6:25054118-25054635	GM12878	blood:	n/a	n/a
21	BATF	chr6:25043216-25043548	GM12878	blood:	n/a	n/a
22	BATF	chr6:25050667-25050928	GM12878	blood:	n/a	n/a
23	BATF	chr6:25138159-25138751	GM12878	blood:	n/a	n/a
24	BATF	chr6:25187119-25187552	GM12878	blood:	n/a	n/a
25	BATF	chr6:25138903-25139261	GM12878	blood:	n/a	n/a
26	BATF	chr6:25187168-25187479	GM12878	blood:	n/a	n/a
27	BATF	chr6:25041908-25042201	GM12878	blood:	n/a	n/a
28	BATF	chr6:25179543-25179755	GM12878	blood:	n/a	n/a
29	BCL11A	chr6:25054118-25054430	GM12878	blood:	n/a	n/a
30	BCL11A	chr6:25138247-25138752	GM12878	blood:	n/a	n/a
31	BCL11A	chr6:25187232-25187518	GM12878	blood:	n/a	n/a
32	BCL11A	chr6:25050675-25050886	GM12878	blood:	n/a	n/a
33	BCL3	chr6:25187138-25187514	GM12878	blood:	n/a	n/a
34	BCL3	chr6:25043238-25043636	GM12878	blood:	n/a	n/a
35	BCLAF1	chr6:25043224-25043819	GM12878	blood:	n/a	chr6:25043758-25043767
36	BCLAF1	chr6:25138131-25139253	GM12878	blood:	n/a	chr6:25139184-25139193
37	BCLAF1	chr6:25054075-25054578	GM12878	blood:	n/a	n/a
38	BCLAF1	chr6:25147298-25147929	GM12878	blood:	n/a	n/a
39	BHLHE40	chr6:25047393-25047501	GM12878	blood:	n/a	n/a
40	BHLHE40	chr6:25084051-25084287	HepG2	liver:	n/a	n/a
41	BHLHE40	chr6:25054093-25054595	GM12878	blood:	n/a	n/a
42	BHLHE40	chr6:25050724-25050923	GM12878	blood:	n/a	n/a
43	BHLHE40	chr6:25070868-25071347	GM12878	blood:	n/a	n/a
44	BHLHE40	chr6:25153388-25153590	K562	blood:	n/a	n/a
45	BHLHE40	chr6:25043257-25043898	GM12878	blood:	n/a	n/a
46	BHLHE40	chr6:25147488-25147755	GM12878	blood:	n/a	n/a
47	BRCA1	chr6:25175293-25176348	Hela-S3	cervix:	n/a	n/a
48	BRCA1	chr6:25113502-25113596	Hela-S3	cervix:	n/a	n/a
49	BRCA1	chr6:25138008-25138134	GM12878	blood:	n/a	n/a
50	BRCA1	chr6:25105254-25106364	Hela-S3	cervix:	n/a	n/a

(count:1954 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:25050788-25050838	HPAEpiC	pulmonary alveolar:	n/a
2	chr6:25088999-25089049	PANC-1	pancreas:	n/a
3	chr6:25050788-25050838	HPAEpiC	pulmonary alveolar:	n/a
4	chr6:25088999-25089049	PANC-1	pancreas:	n/a
5	chr6:25168049-25168099	MCF-7	breast:	n/a
6	chr6:25153422-25153472	AG09319	gingival:	n/a
7	chr6:25042090-25042140	Hepatocyte	liver:	n/a
8	chr6:25042497-25042547	RPTEC	kidney:	n/a
9	chr6:25138905-25138955	NH-A	brain:	n/a
10	chr6:25140136-25140186	HCF	heart:	n/a
11	chr6:25138551-25138601	AG10803	skin:	n/a
12	chr6:25137864-25137914	SAEC	small airway:	n/a
13	chr6:25138551-25138601	HIPEpiC	eye:	n/a
14	chr6:25042495-25042545	Caco-2	colon:	n/a
15	chr6:25137864-25137914	BJ	skin:	n/a
16	chr6:25138416-25138466	GM12891	blood:	n/a
17	chr6:25056629-25056679	HAEpiC	amniotic membrane:	n/a
18	chr6:25187166-25187216	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:25156302-25156352	HPAEpiC	pulmonary alveolar:	n/a
20	chr6:25137971-25138021	Caco-2	colon:	n/a
21	chr6:25050788-25050838	GM06990	blood:	n/a
22	chr6:25056629-25056679	HMEC	breast:	n/a
23	chr6:25153473-25153523	SK-N-MC	brain:	n/a
24	chr6:25042090-25042140	ovcar-3	ovarian:	n/a
25	chr6:25156302-25156352	AG04449	skin:	fetal
26	chr6:25137971-25138021	HL-60	blood:	n/a
27	chr6:25138951-25139001	HCPEpiC	choroid plexus:	n/a
28	chr6:25138905-25138955	GM19239	blood:	n/a
29	chr6:25138632-25138682	BE2_C	brain:	n/a
30	chr6:25156302-25156352	HMEC	breast:	n/a
31	chr6:25061773-25061823	HEEpiC	esophagus:	n/a
32	chr6:25043046-25043096	T-47D	breast:	n/a
33	chr6:25156302-25156352	H1-hESC	embryonic stem cell:	embryo
34	chr6:25153473-25153523	AG09319	gingival:	n/a
35	chr6:25140377-25140427	AG09309	skin:	n/a
36	chr6:25042955-25043005	BJ	skin:	n/a
37	chr6:25138951-25139001	T-47D	breast:	n/a
38	chr6:25138169-25138219	HEK293	kidney:	embryo
39	chr6:25153566-25153616	BE2_C	brain:	n/a
40	chr6:25180502-25180552	AoSMC	blood vessel:	n/a
41	chr6:25140136-25140186	NB4	blood:	n/a
42	chr6:25042497-25042547	HEK293	kidney:	embryo
43	chr6:25042495-25042545	ECC-1	luminal epithelium:	n/a
44	chr6:25042955-25043005	GM06990	blood:	n/a
45	chr6:25138951-25139001	HEEpiC	esophagus:	n/a
46	chr6:25140091-25140141	HAEpiC	amniotic membrane:	n/a
47	chr6:25056629-25056679	NHBE	bronchial:	n/a
48	chr6:25050788-25050838	NT2-D1	testis:	n/a
49	chr6:25138551-25138601	AoSMC	blood vessel:	n/a
50	chr6:25043046-25043096	HRE	kidney:	n/a

(count:71 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:25085087..25087243-chr6:25089273..25091853,2	K562	blood:
2	chr6:25150825..25153623-chr6:25154043..25156150,2	K562	blood:
3	chr6:24855912..24856897-chr6:25070777..25071655,5	K562	blood:
4	chr6:25189909..25192273-chr6:25203769..25206559,2	K562	blood:
5	chr6:25112288..25113816-chr6:25114376..25117367,2	MCF-7	breast:
6	chr6:25151401..25154186-chr6:25154333..25156125,2	MCF-7	breast:
7	chr6:25164710..25167497-chr6:25168984..25171252,3	K562	blood:
8	chr6:25178331..25181085-chr6:25186884..25189706,2	MCF-7	breast:
9	chr6:25085087..25087243-chr6:25089273..25091853,2	K562	blood:
10	chr6:25056745..25058998-chr6:25059205..25062203,2	K562	blood:
11	chr6:25172222..25174508-chr6:25197513..25200143,2	MCF-7	breast:
12	chr6:25164181..25167866-chr6:25169101..25173283,5	MCF-7	breast:
13	chr6:25112288..25113816-chr6:25114376..25117367,2	MCF-7	breast:
14	chr6:25192599..25195454-chr6:25195592..25197372,2	MCF-7	breast:
15	chr6:25172222..25174508-chr6:25197513..25200143,2	MCF-7	breast:
16	chr6:25175190..25179049-chr6:25180144..25182616,3	MCF-7	breast:
17	chr6:25179558..25182381-chr6:25192541..25194103,2	MCF-7	breast:
18	chr6:25122897..25125650-chr6:25128706..25130794,2	MCF-7	breast:
19	chr6:25171770..25173675-chr6:25189662..25191721,2	MCF-7	breast:
20	chr6:25084985..25086769-chr6:25088550..25090244,2	MCF-7	breast:
21	chr6:24855908..24856523-chr6:25070777..25071542,2	MCF-7	breast:
22	chr6:25060649..25063407-chr6:25066068..25067636,2	K562	blood:
23	chr6:24856035..24856908-chr6:25071041..25071669,3	MCF-7	breast:
24	chr6:25110856..25114923-chr6:25121965..25124614,3	MCF-7	breast:
25	chr6:25193162..25195519-chr6:27839293..27841402,2	MCF-7	breast:
26	chr6:25178946..25181215-chr6:27833164..27835187,2	MCF-7	breast:
27	chr6:25067750..25069802-chr6:25071192..25073072,2	K562	blood:
28	chr6:25175400..25178845-chr6:25193942..25196785,3	MCF-7	breast:
29	chr6:25110740..25112750-chr6:25114092..25116124,2	K562	blood:
30	chr6:25056580..25058139-chr6:25068953..25070477,2	K562	blood:
31	chr6:25029897..25032330-chr6:25040931..25043429,2	K562	blood:
32	chr6:25171770..25173675-chr6:25189662..25191721,2	MCF-7	breast:
33	chr6:25083346..25086259-chr6:25098635..25100927,2	MCF-7	breast:
34	chr6:25079917..25082161-chr6:25083077..25085459,2	K562	blood:
35	chr6:25059218..25061939-chr6:25066118..25068353,2	K562	blood:
36	chr6:25178331..25181085-chr6:25186884..25189706,2	MCF-7	breast:
37	chr20:46557528..46559114-chr6:25169864..25172495,2	MCF-7	breast:
38	chr19:36119325..36119902-chr6:25175515..25176489,2	Hela-S3	cervix:
39	chr6:25154053..25159519-chr6:25164374..25167875,7	MCF-7	breast:
40	chr6:25193446..25197455-chr6:25200337..25204634,8	MCF-7	breast:
41	chr6:24933782..24934728-chr6:25070736..25071642,2	K562	blood:
42	chr6:25188401..25191182-chr6:25200062..25202367,2	MCF-7	breast:
43	chr6:25193165..25196605-chr6:25196765..25200177,4	MCF-7	breast:
44	chr6:25122897..25125650-chr6:25128706..25130794,2	MCF-7	breast:
45	chr6:25077616..25079244-chr6:25083484..25086101,3	MCF-7	breast:
46	chr6:25096659..25099596-chr6:25104363..25107003,2	MCF-7	breast:
47	chr6:25111673..25113955-chr6:25164740..25166276,2	MCF-7	breast:
48	chr3:48488059..48488869-chr6:25100447..25101140,2	Hela-S3	cervix:
49	chr6:25192817..25194714-chr6:25278200..25280696,2	MCF-7	breast:
50	chr6:25060649..25063407-chr6:25066068..25067636,2	K562	blood:

(count:31 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CMAHP-1	chr6:25063465-25063490	XLOC_005643
2	lnc-LRRC16A-6	chr6:25164526-25164871	NONHSAT108139
3	lnc-FAM65B-5	chr6:25162207-25162252	NONHSAT108140
4	lnc-CMAHP-1	chr6:25062701-25062888	XLOC_005643
5	lnc-FAM65B-1	chr6:25042079-25042398	ENSG00000272053.1
6	lnc-CMAHP-1	chr6:25061853-25062108	XLOC_005643
7	lnc-CMAHP-1	chr6:25061840-25062108	XLOC_005643
8	lnc-LRRC16A-1	chr6:25056547-25056892	ENSG00000229313.1
9	lnc-FAM65B-1	chr6:25042079-25042398	ENSG00000251355
10	lnc-FAM65B-6	chr6:25170680-25170867	NONHSAT108141
11	lnc-LRRC16A-1	chr6:25055191-25055343	ENSG00000229313.1
12	lnc-FAM65B-5	chr6:25165219-25165280	NONHSAT108140
13	lnc-FAM65B-4	chr6:25150058-25150377	ucscGeneNc_uc010jpw_1
14	lnc-FAM65B-2	chr6:25057240-25057301	XLOC_005642
15	lnc-CMAHP-1	chr6:25063708-25063735	XLOC_005643
16	lnc-FAM65B-6	chr6:25171687-25171714	NONHSAT108141
17	lnc-LRRC16A-6	chr6:25150046-25150123	NONHSAT108139
18	lnc-LRRC16A-1	chr6:25042067-25042144	ENSG00000229313.1
19	lnc-FAM65B-3	chr6:25084708-25085013	NONHSAT108136
20	lnc-LRRC16A-5	chr6:25181587-25181973	NONHSAT108142
21	lnc-LRRC16A-6	chr6:25163170-25163322	NONHSAT108139
22	lnc-FAM65B-3	chr6:25081640-25082107	NONHSAT108136
23	lnc-FAM65B-4	chr6:25123162-25123790	ucscGeneNc_uc010jpw_1
24	lnc-FAM65B-2	chr6:25054684-25054777	XLOC_005642
25	lnc-FAM65B-5	chr6:25161834-25162061	NONHSAT108140
26	lnc-FAM65B-5	chr6:25162663-25162756	NONHSAT108140
27	lnc-FAM65B-2	chr6:25054228-25054273	XLOC_005642
28	lnc-FAM65B-2	chr6:25053855-25054082	XLOC_005642
29	lnc-FAM65B-4	chr6:25123965-25124042	ucscGeneNc_uc010jpw_1
30	lnc-FAM65B-6	chr6:25169832-25170087	NONHSAT108141
31	lnc-CMAHP-1	chr6:25062701-25062888	XLOC_005643

No data

Variant related genes	Relation type
ENSG00000230372	TF binding region
ENSG00000272053	TF binding region
ENSG00000217805	TF binding region
ENSG00000229313	TF binding region
ENSG00000223623	TF binding region
RNY5P5	TF binding region
ENSG00000219682	TF binding region
CMAHP	TF binding region
ENSG00000262400	TF binding region
FAM65B	TF binding region
ENSG00000264238	TF binding region
ENSG00000230372	CpG island
ENSG00000272053	CpG island
ENSG00000217805	CpG island
ENSG00000229313	CpG island
ENSG00000223623	CpG island
RNY5P5	CpG island
ENSG00000219682	CpG island
CMAHP	CpG island
ENSG00000262400	CpG island
FAM65B	CpG island
ENSG00000264238	CpG island
ENSG00000168405	chromatin interactions
ENSG00000222373	chromatin interactions
ENSG00000223623	chromatin interactions
ENSG00000219682	chromatin interactions
ENSG00000264238	chromatin interactions
ENSG00000112308	chromatin interactions
ENSG00000244618	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000182572	chromatin interactions
ENSG00000217805	chromatin interactions
ENSG00000164053	chromatin interactions
ENSG00000244380	chromatin interactions
ENSG00000198558	chromatin interactions
ENSG00000230372	chromatin interactions
ENSG00000262400	chromatin interactions
ENSG00000079691	chromatin interactions
DDX3X	miRNA target sites
TSG101	miRNA target sites
TSGA14	miRNA target sites
JARID2	miRNA target sites
C9orf23	miRNA target sites
NMNAT1	miRNA target sites
FAM175B	miRNA target sites
TSHZ3	miRNA target sites

Extended variants
information (count: 6486 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:6486 , 50 per page) page: 1 2 3 4 5 6 7 ... 130

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535035399	chr6:25039394-25039395	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs558315144	chr6:25039402-25039403	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs578140428	chr6:25039439-25039440	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs9393609	chr6:25039440-25039441	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs372750215	chr6:25039476-25039477	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs562575272	chr6:25039484-25039485	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs576068711	chr6:25039488-25039489	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs191911571	chr6:25039509-25039510	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs146351412	chr6:25039548-25039549	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs139701158	chr6:25039564-25039565	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs149581813	chr6:25039569-25039570	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs368977619	chr6:25039576-25039577	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs532983327	chr6:25039588-25039589	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs184153721	chr6:25039598-25039599	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs303898	chr6:25039602-25039603	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs190131331	chr6:25039735-25039736	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs144295359	chr6:25039750-25039751	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs303899	chr6:25039793-25039794	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs193171251	chr6:25039802-25039803	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs148712670	chr6:25039863-25039864	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs531081168	chr6:25039872-25039873	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs112224264	chr6:25039894-25039895	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs185062649	chr6:25039919-25039920	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs142286939	chr6:25039940-25039941	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs576229163	chr6:25039943-25039944	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs541976936	chr6:25039962-25039963	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs303900	chr6:25039978-25039979	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs571991241	chr6:25039989-25039990	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs541316746	chr6:25039992-25039993	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs376161387	chr6:25040012-25040013	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs303901	chr6:25040018-25040019	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs190650472	chr6:25040035-25040036	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs76528078	chr6:25040057-25040058	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs367821094	chr6:25040088-25040089	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs371391290	chr6:25040117-25040118	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs553312627	chr6:25040122-25040123	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs116638174	chr6:25040124-25040125	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs536536614	chr6:25040132-25040133	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs72841021	chr6:25040303-25040304	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs11384967	chr6:25040348-25040349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs566017277	chr6:25040351-25040352	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs70974962	chr6:25040363-25040364	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs528521855	chr6:25040374-25040375	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs552040758	chr6:25040382-25040383	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs571879070	chr6:25040383-25040384	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs181763359	chr6:25040404-25040405	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs183770787	chr6:25040407-25040408	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs147848791	chr6:25040409-25040410	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs535499249	chr6:25040429-25040430	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs555550770	chr6:25040501-25040502	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	16790693	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Lung cancer	19153074	CNVD
Breast cancer	21364760	CNVD
Cancer	21183584	CNVD
Myelofibrosis	22110671	CNVD
Williams-beuren syndrome	16971481	CNVD
Uveal melanoma	20484589	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:3190 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25035200-25041200	Weak transcription	Fetal Kidney	kidney
2	chr6:25035200-25044600	Weak transcription	Right Atrium	heart
3	chr6:25035800-25039400	Weak transcription	Liver	Liver
4	chr6:25035800-25040600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:25035800-25041000	Enhancers	Fetal Thymus	thymus
6	chr6:25036000-25042400	Weak transcription	Lung	lung
7	chr6:25036400-25040600	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:25036400-25041000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:25036400-25041000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:25036600-25039400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:25036600-25040600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:25036600-25041200	Weak transcription	NH-A	brain
13	chr6:25036600-25041800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:25037000-25041000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:25037800-25039400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:25038400-25039400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:25038400-25040600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:25038600-25040000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr6:25038600-25041200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:25038600-25041400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr6:25038600-25042200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr6:25038800-25039400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:25038800-25039400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:25038800-25039600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
25	chr6:25038800-25039600	Enhancers	Spleen	Spleen
26	chr6:25038800-25039800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr6:25038800-25040000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:25039000-25039400	Enhancers	Small Intestine	intestine
29	chr6:25039000-25039800	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr6:25039000-25039800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr6:25039000-25040200	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr6:25039000-25040200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:25039000-25041400	Enhancers	Primary B cells from cord blood	blood
34	chr6:25039000-25041400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:25039000-25042000	Flanking Active TSS	Dnd41	blood
36	chr6:25039000-25043800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:25039200-25039400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:25039200-25039600	Active TSS	Thymus	Thymus
39	chr6:25039200-25039600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr6:25039400-25039600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:25039400-25039600	Flanking Active TSS	GM12878-XiMat	blood
42	chr6:25039400-25039800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr6:25039400-25039800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr6:25039400-25040200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:25039400-25040600	Enhancers	Fetal Lung	lung
46	chr6:25039400-25041400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr6:25039400-25041800	Weak transcription	Small Intestine	intestine
48	chr6:25039600-25039800	Active TSS	GM12878-XiMat	blood
49	chr6:25039600-25040000	Enhancers	Fetal Heart	heart
50	chr6:25039600-25040000	Flanking Active TSS	Thymus	Thymus

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