Variant report

Variant	nsv830669
Chromosome Location	chr6:61895472-61914086
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:58777707..58778511-chr6:61909313..61909813,2	MCF-7	breast:
2	chr3:64125661..64126400-chr6:61912686..61913542,2	MCF-7	breast:
3	chr6:58776858..58779077-chr6:61908295..61909815,2	MCF-7	breast:
4	chr1:121483338..121485429-chr6:61912530..61914360,3	MCF-7	breast:
5	chr6:58777671..58778345-chr6:61909292..61909815,4	MCF-7	breast:
6	chr6:58777712..58778738-chr6:61909295..61909815,6	MCF-7	breast:
7	chr6:58777651..58778267-chr6:61909313..61909813,3	MCF-7	breast:

Extended variants
information (count: 2613 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:2613 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190715328	chr6:61895473-61895474	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530177000	chr6:61895487-61895488	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs548716922	chr6:61895506-61895507	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs138117481	chr6:61895529-61895530	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114817168	chr6:61895533-61895534	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs184106045	chr6:61895544-61895545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs571440182	chr6:61895556-61895557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs578142416	chr6:61895562-61895563	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs534111645	chr6:61895585-61895586	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs75857308	chr6:61895594-61895595	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs111730948	chr6:61895630-61895631	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs113520116	chr6:61895643-61895644	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs538593574	chr6:61895644-61895645	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs199625948	chr6:61895645-61895646	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs547141032	chr6:61895647-61895648	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200201278	chr6:61895649-61895650	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs9500646	chr6:61895666-61895667	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs535907554	chr6:61895667-61895668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75041025	chr6:61895682-61895683	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs76921568	chr6:61895686-61895687	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs77478938	chr6:61895687-61895688	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs79399245	chr6:61895691-61895692	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs76355320	chr6:61895696-61895697	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs75659860	chr6:61895700-61895701	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs568654164	chr6:61895730-61895731	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201693645	chr6:61895735-61895736	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs4288242	chr6:61895753-61895754	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs188908750	chr6:61895754-61895755	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs375910510	chr6:61895766-61895767	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541756208	chr6:61895825-61895826	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140064043	chr6:61895828-61895829	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs548184480	chr6:61895836-61895837	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs143397483	chr6:61895856-61895857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs76132512	chr6:61895903-61895904	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs563615027	chr6:61895909-61895910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs570480438	chr6:61895918-61895919	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200905043	chr6:61895925-61895926	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531074576	chr6:61895942-61895943	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs116380493	chr6:61895956-61895957	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs146232816	chr6:61895967-61895968	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546759259	chr6:61895971-61895972	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs371599566	chr6:61895973-61895974	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532231081	chr6:61895982-61895983	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112761130	chr6:61895984-61895985	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs112497189	chr6:61895993-61895994	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs4579396	chr6:61895999-61896000	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs565506504	chr6:61896009-61896010	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs536014897	chr6:61896010-61896011	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4579395	chr6:61896011-61896012	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs113315640	chr6:61896014-61896015	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD

Chromatin state (count:309 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61893800-61905800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr6:61894000-61901800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:61894800-61901800	Weak transcription	K562	blood
4	chr6:61896400-61902400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr6:61897000-61898000	ZNF genes & repeats	HUVEC	blood vessel
6	chr6:61897600-61898000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:61898000-61900600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:61900200-61902800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr6:61900600-61901000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:61900600-61902400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr6:61900600-61905400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr6:61901000-61901800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:61901000-61901800	Weak transcription	Brain Angular Gyrus	brain
14	chr6:61901400-61902400	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr6:61901600-61902400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:61901600-61902600	ZNF genes & repeats	HepG2	liver
17	chr6:61901800-61902000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
18	chr6:61901800-61902000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
19	chr6:61901800-61902000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:61901800-61902000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
21	chr6:61901800-61902000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
22	chr6:61901800-61902000	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr6:61901800-61902000	ZNF genes & repeats	Fetal Lung	lung
24	chr6:61901800-61902000	ZNF genes & repeats	A549	lung
25	chr6:61901800-61902000	ZNF genes & repeats	HSMMtube	muscle
26	chr6:61901800-61902000	ZNF genes & repeats	NHDF-Ad	bronchial
27	chr6:61901800-61902200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:61901800-61902200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:61901800-61902200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
30	chr6:61901800-61902200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:61901800-61902200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr6:61901800-61902200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:61901800-61902200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
35	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
37	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:61901800-61902200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
41	chr6:61901800-61902200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:61901800-61902200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
43	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:61901800-61902200	ZNF genes & repeats	Brain Angular Gyrus	brain
45	chr6:61901800-61902200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
46	chr6:61901800-61902200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:61901800-61902200	ZNF genes & repeats	Brain Substantia Nigra	brain
48	chr6:61901800-61902200	ZNF genes & repeats	Colonic Mucosa	Colon
49	chr6:61901800-61902200	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr6:61901800-61902200	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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