Variant report

Variant	nsv830707
Chromosome Location	chr6:80134625-80325171
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3052)
CpG islands
(count:1282)
Chromatin interactive
region (count:136)
LncRNA
region (count:32)
Mature miRNA
region (count: 0)
miRNA target
sites (count:4)

(count:3052 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:80177250-80177813	K562	blood:	n/a	n/a
2	ARID3A	chr6:80235184-80235825	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:80246977-80248592	K562	blood:	n/a	n/a
4	ARID3A	chr6:80280421-80280884	K562	blood:	n/a	n/a
5	ARID3A	chr6:80187067-80187087	K562	blood:	n/a	n/a
6	ARID3A	chr6:80320426-80320640	K562	blood:	n/a	n/a
7	ARID3A	chr6:80284200-80284798	HepG2	liver:	n/a	n/a
8	ARID3A	chr6:80279899-80281051	HepG2	liver:	n/a	n/a
9	ARID3A	chr6:80175976-80176290	HepG2	liver:	n/a	n/a
10	ARID3A	chr6:80170896-80171200	HepG2	liver:	n/a	n/a
11	ARID3A	chr6:80246024-80246629	K562	blood:	n/a	n/a
12	ARID3A	chr6:80316724-80317001	HepG2	liver:	n/a	n/a
13	ARID3A	chr6:80314289-80314979	K562	blood:	n/a	n/a
14	ARID3A	chr6:80235204-80235757	K562	blood:	n/a	n/a
15	ARID3A	chr6:80175985-80176324	K562	blood:	n/a	n/a
16	ARID3A	chr6:80314380-80314832	HepG2	liver:	n/a	n/a
17	ARID3A	chr6:80324369-80324452	K562	blood:	n/a	n/a
18	ARID3A	chr6:80246852-80247644	HepG2	liver:	n/a	n/a
19	ARID3A	chr6:80318365-80319160	HepG2	liver:	n/a	n/a
20	ARID3A	chr6:80214200-80214430	HepG2	liver:	n/a	n/a
21	ARID3A	chr6:80254576-80255190	K562	blood:	n/a	n/a
22	ARID3A	chr6:80310611-80310986	HepG2	liver:	n/a	n/a
23	ARID3A	chr6:80267795-80268259	HepG2	liver:	n/a	n/a
24	ARID3A	chr6:80309588-80309901	K562	blood:	n/a	n/a
25	ARID3A	chr6:80173407-80174028	HepG2	liver:	n/a	n/a
26	ATF1	chr6:80309594-80309914	K562	blood:	n/a	n/a
27	ATF1	chr6:80235408-80235651	K562	blood:	n/a	n/a
28	ATF1	chr6:80254586-80255116	K562	blood:	n/a	n/a
29	ATF1	chr6:80246943-80247490	K562	blood:	n/a	n/a
30	ATF1	chr6:80177466-80177791	K562	blood:	n/a	n/a
31	ATF2	chr6:80246763-80247512	GM12878	blood:	n/a	n/a
32	ATF2	chr6:80247164-80247510	H1-hESC	embryonic stem cell:	n/a	n/a
33	ATF2	chr6:80254612-80255185	H1-hESC	embryonic stem cell:	n/a	n/a
34	ATF2	chr6:80280158-80280618	H1-hESC	embryonic stem cell:	n/a	n/a
35	ATF2	chr6:80254061-80255188	GM12878	blood:	n/a	n/a
36	ATF2	chr6:80253689-80255145	GM12878	blood:	n/a	n/a
37	ATF2	chr6:80280104-80280627	H1-hESC	embryonic stem cell:	n/a	n/a
38	ATF2	chr6:80254616-80255175	H1-hESC	embryonic stem cell:	n/a	n/a
39	ATF3	chr6:80235349-80235792	K562	blood:	n/a	n/a
40	ATF3	chr6:80314149-80314601	K562	blood:	n/a	n/a
41	ATF3	chr6:80254625-80255144	K562	blood:	n/a	n/a
42	BACH1	chr6:80254667-80255106	H1-hESC	embryonic stem cell:	n/a	chr6:80254859-80254873
43	BACH1	chr6:80247333-80247344	K562	blood:	n/a	n/a
44	BACH1	chr6:80254656-80255117	K562	blood:	n/a	chr6:80254859-80254873
45	BACH1	chr6:80279875-80280056	H1-hESC	embryonic stem cell:	n/a	n/a
46	BACH1	chr6:80307832-80308110	H1-hESC	embryonic stem cell:	n/a	n/a
47	BACH1	chr6:80246673-80246985	H1-hESC	embryonic stem cell:	n/a	n/a
48	BACH1	chr6:80315740-80315752	K562	blood:	n/a	n/a
49	BACH1	chr6:80284381-80284745	H1-hESC	embryonic stem cell:	n/a	n/a
50	BACH1	chr6:80307546-80308291	K562	blood:	n/a	n/a

(count:1282 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:80247259-80247309	PrEC	prostate:	n/a
2	chr6:80247259-80247309	PrEC	prostate:	n/a
3	chr6:80247286-80247336	NHBE	bronchial:	n/a
4	chr6:80246572-80246622	Caco-2	colon:	n/a
5	chr6:80247907-80247957	HRE	kidney:	n/a
6	chr6:80247134-80247184	BJ	skin:	n/a
7	chr6:80251197-80251247	AoSMC	blood vessel:	n/a
8	chr6:80246572-80246622	AG09309	skin:	n/a
9	chr6:80247286-80247336	GM19239	blood:	n/a
10	chr6:80268304-80268354	AG04449	skin:	fetal
11	chr6:80247339-80247389	ovcar-3	ovarian:	n/a
12	chr6:80246421-80246471	AG09319	gingival:	n/a
13	chr6:80247037-80247087	GM06990	blood:	n/a
14	chr6:80251197-80251247	GM12891	blood:	n/a
15	chr6:80247256-80247306	HCT-116	colon:	n/a
16	chr6:80247259-80247309	GM19239	blood:	n/a
17	chr6:80247339-80247389	Hepatocyte	liver:	n/a
18	chr6:80247154-80247204	Hepatocyte	liver:	n/a
19	chr6:80247134-80247184	HCPEpiC	choroid plexus:	n/a
20	chr6:80246421-80246471	LNCaP	prostate:	n/a
21	chr6:80247368-80247418	ProgFib	skin:	n/a
22	chr6:80316821-80316871	MCF10A-Er-Src	breast:	n/a
23	chr6:80247037-80247087	LNCaP	prostate:	n/a
24	chr6:80247907-80247957	AG04450	lung:	fetal
25	chr6:80246421-80246471	HCF	heart:	n/a
26	chr6:80196224-80196274	HMEC	breast:	n/a
27	chr6:80247368-80247418	HIPEpiC	eye:	n/a
28	chr6:80247368-80247418	AG09319	gingival:	n/a
29	chr6:80247256-80247306	HRCEpiC	kidney:	n/a
30	chr6:80247134-80247184	NHBE	bronchial:	n/a
31	chr6:80247154-80247204	SKMC	muscle:	n/a
32	chr6:80280621-80280671	AG04450	lung:	fetal
33	chr6:80247907-80247957	NB4	blood:	n/a
34	chr6:80310885-80310935	GM12891	blood:	n/a
35	chr6:80247256-80247306	AG04449	skin:	fetal
36	chr6:80268304-80268354	GM06990	blood:	n/a
37	chr6:80246572-80246622	SAEC	small airway:	n/a
38	chr6:80178612-80178662	SK-N-SH	brain:	n/a
39	chr6:80310885-80310935	IMR90	lung:	fetal
40	chr6:80233633-80233683	GM12891	blood:	n/a
41	chr6:80247344-80247394	SK-N-MC	brain:	n/a
42	chr6:80224471-80224521	RPTEC	kidney:	n/a
43	chr6:80246421-80246471	PrEC	prostate:	n/a
44	chr6:80247368-80247418	GM12878	blood:	n/a
45	chr6:80247037-80247087	AG04449	skin:	fetal
46	chr6:80246421-80246471	HRE	kidney:	n/a
47	chr6:80196224-80196274	PrEC	prostate:	n/a
48	chr6:80251197-80251247	LNCaP	prostate:	n/a
49	chr6:80178612-80178662	AG04450	lung:	fetal
50	chr6:80247154-80247204	A549	lung:	n/a

(count:136 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:80225254..80226799-chr6:80227104..80230022,2	K562	blood:
2	chr6:80314232..80316495-chr6:80323801..80327560,3	K562	blood:
3	chr6:80281015..80282775-chr6:80350445..80353172,2	K562	blood:
4	chr6:80145590..80147714-chr6:80149266..80151314,2	K562	blood:
5	chr6:80178503..80181005-chr6:80182070..80184026,2	K562	blood:
6	chr6:80280197..80280802-chr6:80577120..80578118,2	MCF-7	breast:
7	chr6:80309921..80312950-chr6:80318776..80321900,3	MCF-7	breast:
8	chr6:80193082..80195834-chr6:80196342..80199250,3	K562	blood:
9	chr6:80314864..80317185-chr6:80322166..80324307,2	MCF-7	breast:
10	chr6:80232386..80237378-chr6:80253283..80257767,7	K562	blood:
11	chr6:80211479..80218062-chr6:80218996..80224127,6	K562	blood:
12	chr6:80274259..80277516-chr6:80279204..80282534,3	K562	blood:
13	chr6:80220196..80223373-chr6:80227964..80230707,4	K562	blood:
14	chr6:80270471..80272180-chr6:80272738..80275270,2	K562	blood:
15	chr6:80271060..80273432-chr6:80275931..80278481,2	K562	blood:
16	chr6:80215719..80218658-chr6:80221222..80223898,3	K562	blood:
17	chr6:80140948..80141831-chr6:80176082..80176626,3	MCF-7	breast:
18	chr6:80175533..80178362-chr6:80187176..80190126,2	K562	blood:
19	chr6:80175533..80178362-chr6:80187176..80190126,2	K562	blood:
20	chr6:80242321..80244974-chr6:80252815..80254989,3	K562	blood:
21	chr6:79786974..79789353-chr6:80246033..80249654,3	K562	blood:
22	chr6:80314232..80316495-chr6:80323801..80327560,3	K562	blood:
23	chr6:80134672..80136669-chr6:80150169..80151736,2	MCF-7	breast:
24	chr6:79786363..79788558-chr6:80246704..80249654,3	K562	blood:
25	chr6:80237991..80239810-chr6:80240324..80243252,3	K562	blood:
26	chr6:80211479..80218062-chr6:80218996..80224127,6	K562	blood:
27	chr6:80218148..80219970-chr6:80220759..80223148,2	K562	blood:
28	chr6:79786800..79789680-chr6:80184366..80188325,3	MCF-7	breast:
29	chr6:80212286..80214570-chr6:80222627..80224495,2	K562	blood:
30	chr6:80221232..80224610-chr6:80224901..80227580,3	K562	blood:
31	chr6:80271569..80273432-chr6:80276981..80278496,2	K562	blood:
32	chr6:80233762..80237001-chr6:80242844..80245026,3	K562	blood:
33	chr6:80280191..80281527-chr6:80382018..80383050,5	K562	blood:
34	chr6:80325002..80327627-chr6:80340244..80342308,2	MCF-7	breast:
35	chr6:79786335..79788138-chr6:80172586..80175202,2	MCF-7	breast:
36	chr6:80233865..80235621-chr6:80253239..80255596,2	K562	blood:
37	chr6:80280186..80280816-chr6:80423216..80423767,2	K562	blood:
38	chr6:80314864..80317185-chr6:80322166..80324307,2	MCF-7	breast:
39	chr6:80218148..80219970-chr6:80220759..80223148,2	K562	blood:
40	chr6:80187922..80189709-chr6:80194392..80196096,2	K562	blood:
41	chr6:80247904..80250067-chr6:80253206..80255779,2	MCF-7	breast:
42	chr6:80220196..80223373-chr6:80227964..80230707,4	K562	blood:
43	chr6:80212286..80214570-chr6:80222627..80224495,2	K562	blood:
44	chr6:80274259..80277516-chr6:80279204..80282534,3	K562	blood:
45	chr6:80311176..80314030-chr6:80317329..80319854,3	MCF-7	breast:
46	chr6:80227058..80229732-chr6:80232396..80234486,2	MCF-7	breast:
47	chr6:80265289..80267269-chr6:80272015..80273639,2	K562	blood:
48	chr6:80314692..80316652-chr6:80320135..80321870,2	K562	blood:
49	chr6:80293960..80295543-chr6:80310268..80312348,2	MCF-7	breast:
50	chr6:80318365..80321776-chr6:80322794..80325239,3	K562	blood:

(count:32 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SH3BGRL2-1	chr6:80247342-80247601	XLOC_005361
2	lnc-SH3BGRL2-7	chr6:80262511-80262877	NONHSAT113705
3	lnc-SH3BGRL2-1	chr6:80247547-80247601	XLOC_005361
4	lnc-SH3BGRL2-1	chr6:80248445-80248560	XLOC_005361
5	lnc-SH3BGRL2-1	chr6:80248445-80248560	XLOC_005361
6	lnc-SH3BGRL2-1	chr6:80257132-80257472	NONHSAT113702
7	lnc-SH3BGRL2-8	chr6:80187474-80187741	NONHSAT113694
8	lnc-SH3BGRL2-9	chr6:80190967-80191157	NONHSAT113692
9	lnc-SH3BGRL2-9	chr6:80195902-80196367	NONHSAT113692
10	lnc-SH3BGRL2-1	chr6:80248445-80248560	XLOC_005361
11	lnc-LCA5-1	chr6:80146625-80146884	NONHSAT113693
12	lnc-SH3BGRL2-1	chr6:80251234-80251481	XLOC_005361
13	lnc-SH3BGRL2-9	chr6:80181141-80181234	NONHSAT113692
14	lnc-SH3BGRL2-1	chr6:80259800-80259817	XLOC_005361
15	lnc-SH3BGRL2-8	chr6:80186733-80186840	NONHSAT113694
16	lnc-SH3BGRL2-4	chr6:80313635-80314831	l_3210_chr6:80303886-80314831_testes
17	lnc-SH3BGRL2-1	chr6:80248445-80248562	NONHSAT113702
18	lnc-SH3BGRL2-8	chr6:80186976-80187073	NONHSAT113694
19	lnc-SH3BGRL2-1	chr6:80259800-80259817	XLOC_005361
20	lnc-SH3BGRL2-5	chr6:80283594-80285247	NONHSAT113706
21	lnc-SH3BGRL2-6	chr6:80270849-80271319	ENSG00000272137.1
22	lnc-SH3BGRL2-4	chr6:80303887-80304375	l_3210_chr6:80303886-80314831_testes
23	lnc-SH3BGRL2-9	chr6:80228485-80228894	NONHSAT113695
24	lnc-SH3BGRL2-1	chr6:80251234-80251672	NONHSAT113702
25	lnc-SH3BGRL2-1	chr6:80247342-80247429	XLOC_005361
26	lnc-SH3BGRL2-1	chr6:80265448-80265908	NONHSAT113702
27	lnc-SH3BGRL2-4	chr6:80305164-80305279	l_3210_chr6:80303886-80314831_testes
28	lnc-SH3BGRL2-1	chr6:80251234-80251677	XLOC_005361
29	lnc-SH3BGRL2-1	chr6:80247285-80247429	XLOC_005361
30	lnc-SH3BGRL2-4	chr6:80307939-80308716	l_3210_chr6:80303886-80314831_testes
31	lnc-SH3BGRL2-9	chr6:80190973-80191157	NONHSAT113695
32	lnc-SH3BGRL2-1	chr6:80248445-80248560	XLOC_005361

No data

(count:4 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	LCA5	hsa-miR-10a-5p	chr6:80194781-80194803
2	LCA5	hsa-miR-132-3p	chr6:80222799-80222819
3	LCA5	hsa-miR-10a-5p	chr6:80194808-80194829
4	LCA5	hsa-miR-335-5p	chr6:80196025-80196049

Variant related genes	Relation type
LCA5	TF binding region
ENSG00000261970	TF binding region
ENSG00000272137	TF binding region
DBIP1	TF binding region
LCA5	CpG island
ENSG00000261970	CpG island
ENSG00000272137	CpG island
DBIP1	CpG island
ENSG00000146247	chromatin interactions
ENSG00000270362	chromatin interactions
ENSG00000198478	chromatin interactions
ENSG00000272137	chromatin interactions
ENSG00000135338	chromatin interactions
ENSG00000261970	chromatin interactions
ENSG00000218748	chromatin interactions
OCA2	miRNA target sites
EYS	miRNA target sites
ANGEL2	miRNA target sites
ABHD4	miRNA target sites
SETD7	miRNA target sites

Extended variants
information (count: 7022 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:7022 , 50 per page) page: 1 2 3 4 5 6 7 ... 141

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373606408	chr6:80134629-80134630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563695626	chr6:80134666-80134667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374555823	chr6:80134695-80134696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs538920518	chr6:80134696-80134697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145673494	chr6:80134708-80134709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs111861477	chr6:80134709-80134710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs66459831	chr6:80134710-80134711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs60963046	chr6:80134711-80134712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77502247	chr6:80134712-80134713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs75202337	chr6:80134713-80134714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs78764713	chr6:80134714-80134715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs75194860	chr6:80134716-80134717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs549457886	chr6:80134740-80134741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs138798554	chr6:80134751-80134752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs372482485	chr6:80134763-80134764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs568263600	chr6:80134879-80134880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs12211616	chr6:80134887-80134888	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs181526850	chr6:80134899-80134900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570690755	chr6:80134946-80134947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs196693	chr6:80135058-80135059	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs555933232	chr6:80135124-80135125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs575983279	chr6:80135157-80135158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs9443668	chr6:80135166-80135167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs75053016	chr6:80135185-80135186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs369996309	chr6:80135215-80135216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574355624	chr6:80135216-80135217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs542633198	chr6:80135219-80135220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs554998699	chr6:80135279-80135280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572329679	chr6:80135280-80135281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs115279316	chr6:80135282-80135283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs564315884	chr6:80135283-80135284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs148169397	chr6:80135293-80135294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575355962	chr6:80135311-80135312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs117844076	chr6:80135316-80135317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs186174023	chr6:80135347-80135348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141834996	chr6:80135367-80135368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs377742048	chr6:80135400-80135401	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs549519231	chr6:80135412-80135413	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs150627016	chr6:80135428-80135429	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555234773	chr6:80135450-80135451	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140648155	chr6:80135516-80135517	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs370343698	chr6:80135518-80135519	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376632938	chr6:80135529-80135530	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547642103	chr6:80135549-80135550	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs138782479	chr6:80135565-80135566	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539392682	chr6:80135581-80135582	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550011305	chr6:80135590-80135591	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs149368362	chr6:80135595-80135596	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs535057396	chr6:80135604-80135605	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554477762	chr6:80135607-80135608	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:2174 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80132200-80135400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:80132200-80135400	Weak transcription	Fetal Heart	heart
3	chr6:80133200-80140600	Weak transcription	Fetal Brain Male	brain
4	chr6:80134000-80138800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:80134400-80135400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:80134400-80135400	Weak transcription	Brain Substantia Nigra	brain
7	chr6:80134600-80135400	Weak transcription	Brain Angular Gyrus	brain
8	chr6:80134600-80135800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:80135400-80135600	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:80135400-80136000	Enhancers	Brain Angular Gyrus	brain
11	chr6:80135400-80136000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:80135400-80136000	Enhancers	Brain Substantia Nigra	brain
13	chr6:80135400-80136000	Enhancers	Fetal Heart	heart
14	chr6:80135800-80136200	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr6:80135800-80136200	Enhancers	Small Intestine	intestine
16	chr6:80135800-80136800	Enhancers	Brain Hippocampus Middle	brain
17	chr6:80136000-80136400	Flanking Active TSS	Fetal Heart	heart
18	chr6:80136000-80140600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:80136000-80147600	Weak transcription	Brain Angular Gyrus	brain
20	chr6:80136400-80137000	Enhancers	Fetal Heart	heart
21	chr6:80136800-80137200	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:80137000-80142200	Weak transcription	Fetal Heart	heart
23	chr6:80137200-80137400	Enhancers	Brain Hippocampus Middle	brain
24	chr6:80137400-80147200	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:80138600-80139000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:80138800-80139000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr6:80138800-80139400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:80139000-80139200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:80139600-80140600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:80140000-80140200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:80140000-80140400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:80140200-80141600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:80140400-80145800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:80140600-80140800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr6:80140600-80141000	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:80140600-80141000	Enhancers	Fetal Brain Male	brain
37	chr6:80140600-80141200	Enhancers	HSMMtube	muscle
38	chr6:80140600-80141400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr6:80140800-80141000	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr6:80140800-80141200	Enhancers	Gastric	stomach
41	chr6:80141000-80143000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:80141000-80147400	Enhancers	Fetal Intestine Large	intestine
43	chr6:80141200-80141600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:80141200-80146400	Weak transcription	HSMMtube	muscle
45	chr6:80141400-80141800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:80141400-80141800	Enhancers	HMEC	breast
47	chr6:80141400-80142600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:80141400-80142600	Enhancers	Hela-S3	cervix
49	chr6:80141400-80143800	Enhancers	Fetal Intestine Small	intestine
50	chr6:80141600-80141800	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links