Variant report

Variant	nsv830834
Chromosome Location	chr6:145392073-145556294
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:145396467..145397056-chr6:145535409..145536250,2	MCF-7	breast:
2	chr6:145422459..145425405-chr6:145430623..145432232,2	MCF-7	breast:
3	chr6:145529055..145531591-chr6:145532169..145534485,2	MCF-7	breast:
4	chr6:145396467..145397056-chr6:145535409..145536250,2	MCF-7	breast:
5	chr6:145458549..145459292-chr6:145535350..145535961,2	MCF-7	breast:
6	chr6:145529055..145531591-chr6:145532169..145534485,2	MCF-7	breast:
7	chr6:144906202..144908261-chr6:145458578..145460342,2	MCF-7	breast:
8	chr6:144905902..144906972-chr6:145534873..145536365,4	K562	blood:
9	chr6:145422459..145425405-chr6:145430623..145432232,2	MCF-7	breast:
10	chr6:145547168..145549367-chr6:145552158..145554924,2	MCF-7	breast:
11	chr6:144902620..144903603-chr6:145535345..145536293,3	K562	blood:
12	chr6:145405009..145407023-chr6:145407412..145410663,3	MCF-7	breast:
13	chr6:145215634..145217242-chr6:145456840..145459220,2	MCF-7	breast:
14	chr6:145349488..145350116-chr6:145535389..145536274,2	MCF-7	breast:
15	chr6:145353179..145355811-chr6:145521442..145523143,2	K562	blood:
16	chr6:145547168..145549367-chr6:145552158..145554924,2	MCF-7	breast:
17	chr6:145530397..145532118-chr6:145532135..145534427,2	K562	blood:
18	chr6:145458549..145459292-chr6:145535350..145535961,2	MCF-7	breast:
19	chr6:145430494..145433220-chr6:145468971..145470857,2	MCF-7	breast:
20	chr6:144902851..144903376-chr6:145535252..145535879,2	MCF-7	breast:
21	chr6:145405009..145407023-chr6:145407412..145410663,3	MCF-7	breast:
22	chr6:145530397..145532118-chr6:145532135..145534427,2	K562	blood:
23	chr6:145416991..145417491-chr7:156776706..156777307,2	MCF-7	breast:
24	chr21:22732799..22733441-chr6:145481975..145482791,2	MCF-7	breast:
25	chr6:145430494..145433220-chr6:145468971..145470857,2	MCF-7	breast:
26	chr6:145535549..145536107-chr6:145954859..145955499,2	MCF-7	breast:
27	chr1:81845719..81846637-chr6:145435298..145436075,2	MCF-7	breast:
28	chr6:144906108..144907031-chr6:145535323..145536185,3	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UTRN-2	chr6:145475559-145475587	NONHSAT115389
2	lnc-UTRN-2	chr6:145469831-145470278	NONHSAT115389
3	lnc-UTRN-2	chr6:145475560-145475587	XLOC_005493
4	lnc-UTRN-2	chr6:145469832-145470278	XLOC_005493

No data

Variant related genes	Relation type
FADS2	miRNA target sites
HEATR7A	miRNA target sites

Extended variants
information (count: 3619 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:3619 , 50 per page) page: 1 2 3 4 5 6 7 ... 73

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs34159582	chr6:145392119-145392120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs112360826	chr6:145392143-145392144	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs74854590	chr6:145392162-145392163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs565683897	chr6:145392190-145392191	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs76332594	chr6:145392260-145392261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs186734687	chr6:145392281-145392282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs140446283	chr6:145392291-145392292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs534726691	chr6:145392333-145392334	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs377307759	chr6:145392360-145392361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs538505202	chr6:145392368-145392369	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs77356351	chr6:145392486-145392487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs73009350	chr6:145392496-145392497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs113276075	chr6:145392531-145392532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs79578730	chr6:145392556-145392557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs113486822	chr6:145392590-145392591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs542983623	chr6:145392634-145392635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs554636624	chr6:145392648-145392649	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs75181197	chr6:145392662-145392663	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs368413984	chr6:145392676-145392677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs543273112	chr6:145392682-145392683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs564838070	chr6:145392738-145392739	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs532172477	chr6:145392768-145392769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs192567295	chr6:145392772-145392773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs138060874	chr6:145392774-145392775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs114005637	chr6:145392776-145392777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs548282496	chr6:145392777-145392778	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs569630472	chr6:145392812-145392813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs149460063	chr6:145392863-145392864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs550494729	chr6:145392867-145392868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs375826652	chr6:145392909-145392910	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs78495905	chr6:145392941-145392942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs143008797	chr6:145392968-145392969	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs554097780	chr6:145392989-145392990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs138744729	chr6:145393058-145393059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs76520493	chr6:145393062-145393063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs368458238	chr6:145393069-145393070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs528542056	chr6:145393123-145393124	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs575982184	chr6:145393152-145393153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs543456826	chr6:145393191-145393192	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs560041613	chr6:145395006-145395007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs184607235	chr6:145395043-145395044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs34288206	chr6:145395064-145395065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs111776963	chr6:145395084-145395085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs139393828	chr6:145395121-145395122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs569938665	chr6:145395146-145395147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs540461853	chr6:145395163-145395164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs7758132	chr6:145395166-145395167	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs533234053	chr6:145396808-145396809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs571046395	chr6:145396859-145396860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs114828980	chr6:145396896-145396897	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:396 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145388000-145393000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:145388000-145393200	Enhancers	NHDF-Ad	bronchial
3	chr6:145388200-145393200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:145390600-145393000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:145390800-145392800	Enhancers	HSMMtube	muscle
6	chr6:145391000-145393000	Enhancers	Osteobl	bone
7	chr6:145391200-145393000	Enhancers	NHLF	lung
8	chr6:145391400-145392600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:145391400-145393000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:145391800-145392600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:145391800-145392600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:145391800-145392800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:145391800-145393000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:145391800-145393000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:145391800-145393000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:145391800-145393000	Enhancers	HSMM	muscle
17	chr6:145391800-145393000	Enhancers	NH-A	brain
18	chr6:145391800-145393000	Enhancers	NHEK	skin
19	chr6:145391800-145393200	Enhancers	HMEC	breast
20	chr6:145395000-145395200	Enhancers	Osteobl	bone
21	chr6:145396800-145397600	Enhancers	Liver	Liver
22	chr6:145397200-145398000	Enhancers	HepG2	liver
23	chr6:145397600-145398000	Flanking Active TSS	Liver	Liver
24	chr6:145398000-145399600	Enhancers	Liver	Liver
25	chr6:145398400-145399200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:145399000-145399600	Enhancers	HSMMtube	muscle
27	chr6:145399200-145399600	Enhancers	Fetal Heart	heart
28	chr6:145399200-145401600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:145399600-145401800	Weak transcription	HSMMtube	muscle
30	chr6:145401400-145402200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:145401600-145401800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:145401600-145402000	Enhancers	Adipose Nuclei	Adipose
33	chr6:145401800-145402000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:145401800-145402200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:145401800-145402200	Enhancers	HSMMtube	muscle
36	chr6:145402000-145402200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:145402200-145407000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:145402200-145407400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:145402200-145407800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:145407000-145407800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:145407200-145407600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:145407200-145407600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:145407200-145407600	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr6:145407200-145407800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:145407200-145408000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr6:145407400-145407800	Enhancers	H1 Cell Line	embryonic stem cell
47	chr6:145407400-145408600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:145407600-145408200	Enhancers	HSMMtube	muscle
49	chr6:145407800-145408000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:145407800-145408600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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