Variant report

Variant	nsv830928
Chromosome Location	chr7:25820147-25965014
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:168)
LncRNA
region (count:22)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:168 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr7:25902131..25903827-chr7:25913868..25916119,2	K562	blood:
2	chr7:25951352..25952965-chr7:25956982..25959003,2	K562	blood:
3	chr7:25934539..25937076-chr7:26238878..26241529,2	K562	blood:
4	chr7:25852328..25854029-chr7:25857318..25858829,2	K562	blood:
5	chr7:25878574..25880347-chr7:25882130..25884614,2	K562	blood:
6	chr7:25961990..25963849-chr7:25966309..25968265,2	MCF-7	breast:
7	chr7:25900551..25904078-chr7:26238740..26241514,6	K562	blood:
8	chr7:25894455..25895208-chr7:25934652..25935445,2	K562	blood:
9	chr7:25946705..25948507-chr7:25987208..25989031,2	K562	blood:
10	chr7:25929289..25930840-chr7:25934991..25937608,2	K562	blood:
11	chr7:25901348..25903877-chr7:25904726..25907059,2	K562	blood:
12	chr7:25844831..25847741-chr7:25850987..25853928,3	K562	blood:
13	chr7:25925894..25927680-chr7:25929119..25930784,2	K562	blood:
14	chr7:25932524..25934577-chr7:26238424..26241331,2	MCF-7	breast:
15	chr7:25909092..25911121-chr7:25913074..25914665,2	MCF-7	breast:
16	chr7:25931505..25937179-chr7:26236822..26244263,8	MCF-7	breast:
17	chr7:25952760..25954350-chr7:25989892..25992459,2	K562	blood:
18	chr7:25751339..25752861-chr7:25879316..25882224,2	MCF-7	breast:
19	chr7:25928700..25931118-chr7:25931774..25933928,2	K562	blood:
20	chr7:25862249..25865211-chr7:25870561..25873090,2	MCF-7	breast:
21	chr7:25900891..25903409-chr7:25932154..25934177,2	K562	blood:
22	chr7:25900891..25903409-chr7:25932154..25934177,2	K562	blood:
23	chr7:25923786..25925594-chr7:25937071..25938601,2	MCF-7	breast:
24	chr7:25893918..25894862-chr7:25932230..25933199,2	K562	blood:
25	chr7:25901765..25903846-chr7:25928862..25931823,2	K562	blood:
26	chr7:25929289..25930840-chr7:25934991..25937608,2	K562	blood:
27	chr7:25893947..25899810-chr7:26238759..26243593,6	K562	blood:
28	chr7:25928700..25931118-chr7:25931774..25933928,2	K562	blood:
29	chr7:25844831..25847741-chr7:25850987..25853928,3	K562	blood:
30	chr7:25951352..25952965-chr7:25956982..25959003,2	K562	blood:
31	chr7:25905009..25906710-chr7:26241408..26243816,2	K562	blood:
32	chr7:25759879..25760410-chr7:25891017..25891630,2	MCF-7	breast:
33	chr7:25935066..25937327-chr7:25986034..25989938,3	K562	blood:
34	chr7:25951761..25954301-chr7:25955660..25959203,4	K562	blood:
35	chr7:25163504..25166316-chr7:25894348..25896748,3	K562	blood:
36	chr7:25916222..25918065-chr7:25927760..25929290,2	K562	blood:
37	chr7:25934810..25937862-chr7:26237849..26240510,3	MCF-7	breast:
38	chr7:25605147..25606187-chr7:25890189..25892015,14	MCF-7	breast:
39	chr7:25953157..25955239-chr7:25965807..25967682,2	K562	blood:
40	chr7:25902422..25904176-chr7:25907218..25908860,2	K562	blood:
41	chr7:25932584..25935107-chr7:25938782..25940609,2	K562	blood:
42	chr7:25919887..25922419-chr7:25922573..25924803,2	MCF-7	breast:
43	chr7:25932775..25935474-chr7:25989853..25992220,2	K562	blood:
44	chr17:59486909..59487865-chr7:25891255..25892006,2	MCF-7	breast:
45	chr7:25901881..25903574-chr7:26239063..26240949,2	MCF-7	breast:
46	chr7:25893945..25894718-chr7:26404689..26405336,3	MCF-7	breast:
47	chr7:25855015..25857830-chr7:25872631..25874707,2	K562	blood:
48	chr7:25878624..25881558-chr7:25895080..25897783,3	K562	blood:
49	chr7:25163578..25166316-chr7:25895123..25897377,2	K562	blood:
50	chr7:25925894..25927680-chr7:25929119..25930784,2	K562	blood:

(count:22 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NFE2L3-6	chr7:25845236-25845498	l_3382_chr7:25845235-25854943_adipose
2	lnc-HNRNPA2B1-4	chr7:25872530-25872690	XLOC_006383
3	lnc-HNRNPA2B1-12	chr7:25839055-25839215	l_3381_chr7:25837363-25839215_testes
4	lnc-HNRNPA2B1-4	chr7:25871386-25871569	XLOC_006383
5	lnc-HNRNPA2B1-12	chr7:25837846-25838094	l_3381_chr7:25837363-25839215_testes
6	lnc-HNRNPA2B1-4	chr7:25870839-25871179	XLOC_006383
7	lnc-HNRNPA2B1-4	chr7:25872530-25872690	XLOC_006383
8	lnc-HNRNPA2B1-4	chr7:25870917-25871179	NONHSAT119604
9	lnc-HNRNPA2B1-4	chr7:25870914-25871197	XLOC_006383
10	lnc-HNRNPA2B1-4	chr7:25872530-25872577	NONHSAT119604
11	lnc-HNRNPA2B1-4	chr7:25871386-25871569	XLOC_006383
12	lnc-HNRNPA2B1-4	chr7:25870914-25871179	XLOC_006383
13	lnc-HNRNPA2B1-4	chr7:25872530-25872690	XLOC_006383
14	lnc-HNRNPA2B1-11	chr7:25955640-25955975	expReg_chr7_2066_-
15	lnc-NFE2L3-6	chr7:25853496-25854943	l_3382_chr7:25845235-25854943_adipose
16	lnc-NFE2L3-1	chr7:25886348-25888418	XLOC_006016
17	lnc-HNRNPA2B1-12	chr7:25837364-25837722	l_3381_chr7:25837363-25839215_testes
18	lnc-NFE2L3-6	chr7:25852873-25853482	l_3382_chr7:25845235-25854943_adipose
19	lnc-NFE2L3-5	chr7:25951299-25951446	NONHSAT119607
20	lnc-HNRNPA2B1-4	chr7:25871321-25871569	XLOC_006383
21	lnc-NFE2L3-5	chr7:25932605-25933047	NONHSAT119607
22	lnc-NFE2L3-1	chr7:25878711-25878973	XLOC_006016

No data

Variant related genes	Relation type
ENSG00000122565	chromatin interactions
ENSG00000070081	chromatin interactions
ENSG00000122566	chromatin interactions
ENSG00000225792	chromatin interactions
ENSG00000270933	chromatin interactions
ENSG00000050344	chromatin interactions
ENSG00000199085	chromatin interactions
ENSG00000172115	chromatin interactions
TFAP4	miRNA target sites
RBPMS	miRNA target sites
FAM35B	miRNA target sites

Extended variants
information (count: 4855 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:4855 , 50 per page) page: 1 2 3 4 5 6 7 ... 98

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546008789	chr7:25820174-25820175	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs539176235	chr7:25820190-25820191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs181962609	chr7:25820209-25820210	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs528823087	chr7:25820244-25820245	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs548559324	chr7:25820275-25820276	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs560035948	chr7:25820281-25820282	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs6973956	chr7:25820306-25820307	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs186536273	chr7:25820313-25820314	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs368257609	chr7:25820508-25820509	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs192187205	chr7:25820527-25820528	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs551058159	chr7:25820545-25820546	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs182747942	chr7:25820618-25820619	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs571545885	chr7:25820647-25820648	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs187726759	chr7:25820661-25820662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs141956766	chr7:25820701-25820702	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs535430937	chr7:25820702-25820703	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs191208817	chr7:25820718-25820719	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs182437852	chr7:25820747-25820748	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs80082148	chr7:25820754-25820755	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs557404259	chr7:25820818-25820819	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs577328225	chr7:25820914-25820915	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs533828618	chr7:25820930-25820931	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs545977840	chr7:25820935-25820936	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs115065316	chr7:25821005-25821006	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs573459139	chr7:25821025-25821026	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs372452734	chr7:25821039-25821040	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs562418001	chr7:25821050-25821051	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs187438518	chr7:25821054-25821055	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs139995864	chr7:25821086-25821087	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs562184849	chr7:25821088-25821089	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs115775385	chr7:25821091-25821092	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs546773016	chr7:25821128-25821129	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs192240194	chr7:25821152-25821153	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs535726527	chr7:25821175-25821176	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs548973775	chr7:25821262-25821263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531431653	chr7:25821277-25821278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs149839314	chr7:25821296-25821297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs537401935	chr7:25821317-25821318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs144704337	chr7:25821380-25821381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs184267127	chr7:25821401-25821402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs886835	chr7:25821423-25821424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187942630	chr7:25821432-25821433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs112366651	chr7:25821433-25821434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200936944	chr7:25821505-25821506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs562905675	chr7:25821562-25821563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375696448	chr7:25821595-25821596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs7798211	chr7:25821601-25821602	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs7779030	chr7:25821610-25821611	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs114264544	chr7:25821641-25821642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576019701	chr7:25821681-25821682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Cancer	21183584	CNVD
abnormal development	18461090	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Colorectal cancer	16774939	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Lung adenocarcinoma	17086460	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17086460	CNVD
Breast cancer	18852474	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Acute myeloid leukemia	20962326	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2762 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25816000-25825600	Weak transcription	Aorta	Aorta
2	chr7:25818400-25825400	Weak transcription	Fetal Lung	lung
3	chr7:25818400-25826400	Weak transcription	Fetal Kidney	kidney
4	chr7:25818600-25821200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr7:25819600-25827000	Weak transcription	Psoas Muscle	Psoas
6	chr7:25821200-25829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:25822600-25823000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:25823000-25842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:25824800-25829400	Enhancers	Fetal Stomach	stomach
10	chr7:25825200-25825400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:25825200-25826200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:25825200-25827600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:25825200-25827600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:25825200-25827800	Enhancers	Ovary	ovary
15	chr7:25825400-25826000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:25825400-25827000	Weak transcription	Fetal Intestine Small	intestine
17	chr7:25825400-25829000	Enhancers	Fetal Lung	lung
18	chr7:25825600-25825800	Bivalent Enhancer	Fetal Intestine Large	intestine
19	chr7:25825600-25827800	Enhancers	Aorta	Aorta
20	chr7:25825600-25828400	Enhancers	Colon Smooth Muscle	Colon
21	chr7:25825800-25828600	Enhancers	Rectal Smooth Muscle	rectum
22	chr7:25826000-25827600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:25826200-25826600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:25826200-25827200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:25826200-25827400	Enhancers	NHLF	lung
26	chr7:25826200-25828200	Enhancers	Fetal Muscle Leg	muscle
27	chr7:25826200-25828200	Enhancers	Stomach Smooth Muscle	stomach
28	chr7:25826400-25827200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr7:25826400-25827600	Enhancers	Fetal Kidney	kidney
30	chr7:25826600-25828200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:25826800-25827800	Enhancers	Adipose Nuclei	Adipose
32	chr7:25827000-25827800	Enhancers	Fetal Intestine Small	intestine
33	chr7:25827000-25827800	Enhancers	Fetal Muscle Trunk	muscle
34	chr7:25827000-25827800	Enhancers	Left Ventricle	heart
35	chr7:25827000-25827800	Enhancers	Psoas Muscle	Psoas
36	chr7:25827400-25828000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr7:25827400-25835200	Weak transcription	NHLF	lung
38	chr7:25827600-25829400	Weak transcription	Fetal Kidney	kidney
39	chr7:25827600-25829600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:25827600-25829600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:25827600-25835200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:25827800-25829400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr7:25827800-25830200	Weak transcription	Left Ventricle	heart
44	chr7:25827800-25834600	Weak transcription	Aorta	Aorta
45	chr7:25827800-25835600	Weak transcription	Adipose Nuclei	Adipose
46	chr7:25828200-25829200	Weak transcription	Fetal Muscle Leg	muscle
47	chr7:25828200-25829600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:25828200-25829800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:25828400-25829800	Weak transcription	Colon Smooth Muscle	Colon
50	chr7:25828600-25834800	Weak transcription	Rectal Smooth Muscle	rectum

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