Variant report

Variant	nsv831012
Chromosome Location	chr7:61090236-61275278
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2923 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:2923 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151264573	chr7:61090241-61090242	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs117211747	chr7:61090244-61090245	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs142456991	chr7:61090249-61090250	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs139999330	chr7:61090251-61090252	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs147695710	chr7:61090254-61090255	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs117414451	chr7:61090257-61090258	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569787884	chr7:61090259-61090260	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs117969776	chr7:61090261-61090262	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115273808	chr7:61090263-61090264	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs145563986	chr7:61090268-61090269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs144611287	chr7:61090275-61090276	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148983415	chr7:61090279-61090280	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs117602157	chr7:61090284-61090285	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs148834625	chr7:61090287-61090288	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138497094	chr7:61090294-61090295	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549202651	chr7:61090296-61090297	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs567445981	chr7:61090298-61090299	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs534944640	chr7:61090304-61090305	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552969133	chr7:61090313-61090314	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs577735508	chr7:61090317-61090318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113369438	chr7:61090318-61090319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374790181	chr7:61090319-61090320	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576899950	chr7:61090323-61090324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12666000	chr7:61090325-61090326	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368219821	chr7:61090332-61090333	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs539536150	chr7:61090341-61090342	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111237406	chr7:61090342-61090343	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372466221	chr7:61090344-61090345	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs112021874	chr7:61090350-61090351	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs557101666	chr7:61090353-61090354	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113070155	chr7:61090361-61090362	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575335495	chr7:61090364-61090365	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375969560	chr7:61090365-61090366	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs368607054	chr7:61090368-61090369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs543649401	chr7:61090374-61090375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113508266	chr7:61090375-61090376	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs62462105	chr7:61090383-61090384	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs199933285	chr7:61090391-61090392	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62462106	chr7:61090392-61090393	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs371635157	chr7:61090396-61090397	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541586170	chr7:61090398-61090399	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs62462107	chr7:61090408-61090409	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs112786855	chr7:61090413-61090414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs62462108	chr7:61090419-61090420	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs574233601	chr7:61090431-61090432	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs200041974	chr7:61090450-61090451	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs541343804	chr7:61090451-61090452	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs559297502	chr7:61090474-61090475	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs533159705	chr7:61090482-61090483	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs551424019	chr7:61090498-61090499	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Recurrent pregnancy loss	19789632	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:185 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61085400-61093200	Weak transcription	K562	blood
2	chr7:61087600-61090800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr7:61087600-61098000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr7:61087800-61098000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr7:61088000-61092400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:61090000-61090400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr7:61090000-61090400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
8	chr7:61090000-61090600	ZNF genes & repeats	HUVEC	blood vessel
9	chr7:61091400-61091800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr7:61091400-61098000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr7:61091600-61092000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr7:61091800-61092000	ZNF genes & repeats	Colon Smooth Muscle	Colon
13	chr7:61091800-61092000	ZNF genes & repeats	HUVEC	blood vessel
14	chr7:61092200-61099600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:61093800-61097200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:61095400-61095600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
17	chr7:61095400-61095600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
18	chr7:61095400-61095600	ZNF genes & repeats	Fetal Lung	lung
19	chr7:61095400-61097000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:61096400-61097000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:61096600-61098000	ZNF genes & repeats	Liver	Liver
22	chr7:61097000-61099400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:61097200-61097800	ZNF genes & repeats	Psoas Muscle	Psoas
24	chr7:61097400-61098000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
25	chr7:61097600-61098000	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr7:61097600-61098000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr7:61097800-61099200	Weak transcription	Psoas Muscle	Psoas
28	chr7:61098000-61099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:61098000-61099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:61098000-61099400	Weak transcription	Liver	Liver
31	chr7:61098000-61099400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr7:61098200-61099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:61099200-61100400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:61099200-61100400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr7:61099200-61100400	ZNF genes & repeats	Psoas Muscle	Psoas
36	chr7:61099200-61100400	ZNF genes & repeats	Thymus	Thymus
37	chr7:61099400-61100000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr7:61099400-61100200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
39	chr7:61099400-61100200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
40	chr7:61099400-61100400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr7:61099400-61100400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr7:61099400-61100400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:61099400-61100400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
45	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr7:61099400-61100400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr7:61099400-61100400	ZNF genes & repeats	Liver	Liver
48	chr7:61099400-61100400	ZNF genes & repeats	Brain Substantia Nigra	brain
49	chr7:61099400-61100400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
50	chr7:61099400-61100400	Bivalent/Poised TSS	Right Ventricle	heart

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