Variant report

Variant	nsv831096
Chromosome Location	chr7:109683152-109852443
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:109750040..109751863-chr7:109755032..109756832,2	MCF-7	breast:
2	chr7:109722572..109725261-chr7:109725465..109727618,2	K562	blood:
3	chr7:109729949..109731077-chr7:109844325..109845051,5	MCF-7	breast:
4	chr7:109730201..109731073-chr7:110082423..110082955,4	MCF-7	breast:
5	chr7:109722572..109724560-chr7:109725322..109727410,3	K562	blood:
6	chr7:109729949..109731077-chr7:109844325..109845051,5	MCF-7	breast:
7	chr7:109722572..109725261-chr7:109725465..109727618,2	K562	blood:
8	chr7:109829687..109832206-chr7:109833977..109835714,2	MCF-7	breast:
9	chr7:109722572..109724560-chr7:109725322..109727410,3	K562	blood:
10	chr7:109750040..109751863-chr7:109755032..109756832,2	MCF-7	breast:
11	chr7:109484230..109484803-chr7:109844371..109845272,2	MCF-7	breast:
12	chr7:108253546..108254236-chr7:109729971..109730802,2	MCF-7	breast:
13	chr7:109848112..109850390-chr7:109852917..109854789,2	K562	blood:
14	chr7:109750645..109752483-chr7:109755448..109757268,2	K562	blood:
15	chr7:109750645..109752483-chr7:109755448..109757268,2	K562	blood:
16	chr7:109829687..109832206-chr7:109833977..109835714,2	MCF-7	breast:
17	chr7:109729852..109730963-chr7:110082075..110082714,4	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IMMP2L-6	chr7:109750710-109750732	NONHSAT122759
2	lnc-IMMP2L-6	chr7:109748142-109748387	NONHSAT122759
3	lnc-LRRN3-4	chr7:109703486-109703925	NONHSAT122758
4	lnc-LRRN3-4	chr7:109704661-109704892	NONHSAT122758

No data

Extended variants
information (count: 3442 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:3442 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558952323	chr7:109683515-109683516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs572576161	chr7:109683535-109683536	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs370641324	chr7:109683571-109683572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs535174623	chr7:109683659-109683660	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs188739477	chr7:109683698-109683699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs554811724	chr7:109683738-109683739	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567067977	chr7:109683744-109683745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs574582355	chr7:109683748-109683749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs181517072	chr7:109683755-109683756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs563454164	chr7:109683816-109683817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs143787616	chr7:109683850-109683851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs545403347	chr7:109683897-109683898	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs114036500	chr7:109683898-109683899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs558874510	chr7:109683921-109683922	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs528071533	chr7:109684015-109684016	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs186110476	chr7:109684017-109684018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs561806130	chr7:109684051-109684052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs530252572	chr7:109684072-109684073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs148163453	chr7:109684081-109684082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs550314694	chr7:109684098-109684099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs574510963	chr7:109684161-109684162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs570261247	chr7:109684190-109684191	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs530585736	chr7:109684816-109684817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs1357955	chr7:109684830-109684831	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs374806659	chr7:109684838-109684839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs563952702	chr7:109684865-109684866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs58105869	chr7:109684910-109684911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs562528845	chr7:109685032-109685033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs570189101	chr7:109685083-109685084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs532741499	chr7:109685148-109685149	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs537285668	chr7:109685151-109685152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs371398026	chr7:109685162-109685163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs555810618	chr7:109685188-109685189	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs535276310	chr7:109689005-109689006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs567191025	chr7:109689020-109689021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs529675862	chr7:109689054-109689055	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs372245407	chr7:109689056-109689057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs549637330	chr7:109689087-109689088	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs569382547	chr7:109689115-109689116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs74410687	chr7:109689124-109689125	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs547113874	chr7:109689130-109689131	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs557888049	chr7:109689139-109689140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs571608707	chr7:109689164-109689165	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs73714037	chr7:109689175-109689176	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs182307278	chr7:109689182-109689183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs34666805	chr7:109689186-109689187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs187364291	chr7:109689193-109689194	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs539006041	chr7:109689211-109689212	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs536629771	chr7:109689238-109689239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs557037694	chr7:109689243-109689244	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109683400-109683600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:109683400-109683800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:109683400-109684200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:109683600-109684000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:109684800-109685200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr7:109689000-109689600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:109689200-109690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:109689200-109691600	Enhancers	HMEC	breast
9	chr7:109689200-109691600	Enhancers	NHEK	skin
10	chr7:109689400-109690600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:109689400-109690800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:109690200-109690600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:109690600-109691200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:109690800-109691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:109691200-109691800	Enhancers	Colon Smooth Muscle	Colon
16	chr7:109691400-109691600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:109691400-109691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:109705000-109705400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:109711000-109711200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr7:109711200-109711600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:109711400-109711800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:109711400-109711800	Enhancers	Fetal Brain Male	brain
23	chr7:109711600-109713800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:109711800-109712200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:109712200-109712800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:109713600-109714000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:109713800-109714200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:109716800-109717200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:109723800-109724200	Enhancers	Fetal Brain Male	brain
30	chr7:109723800-109724400	Enhancers	Fetal Heart	heart
31	chr7:109724000-109725200	Enhancers	Liver	Liver
32	chr7:109724200-109724600	Enhancers	Pancreas	Pancrea
33	chr7:109724400-109724800	Enhancers	Adipose Nuclei	Adipose
34	chr7:109724400-109724800	Enhancers	Fetal Stomach	stomach
35	chr7:109724400-109725000	Enhancers	Fetal Lung	lung
36	chr7:109724600-109725400	Enhancers	Fetal Brain Female	brain
37	chr7:109728600-109730600	Weak transcription	Dnd41	blood
38	chr7:109730600-109730800	ZNF genes & repeats	Dnd41	blood
39	chr7:109732600-109733000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:109733000-109733400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:109733000-109734000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr7:109733400-109733600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:109734400-109736400	Enhancers	Colon Smooth Muscle	Colon
44	chr7:109736800-109737800	Enhancers	Dnd41	blood
45	chr7:109737800-109738200	Weak transcription	Dnd41	blood
46	chr7:109738200-109739200	ZNF genes & repeats	Dnd41	blood
47	chr7:109739200-109755800	Weak transcription	Dnd41	blood
48	chr7:109744200-109745400	Enhancers	Brain Germinal Matrix	brain
49	chr7:109745200-109745800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:109745200-109746000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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