Variant report

Variant	nsv831698
Chromosome Location	chr9:118284259-118446456
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:26)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:118364883..118366528-chr9:118368229..118369775,2	K562	blood:
2	chr9:118353398..118354353-chr9:119423269..119423966,2	MCF-7	breast:
3	chr9:118355902..118356600-chr9:119423587..119424574,2	MCF-7	breast:
4	chr9:118382226..118384987-chr9:118388339..118391664,3	MCF-7	breast:
5	chr9:118332824..118334769-chr9:118337363..118339867,2	K562	blood:
6	chr9:118346081..118348622-chr9:118350631..118353525,2	MCF-7	breast:
7	chr9:117988097..117989116-chr9:118286127..118287416,14	MCF-7	breast:
8	chr9:118296994..118298706-chr9:118305730..118308270,2	K562	blood:
9	chr9:118355579..118356098-chr9:118645880..118646443,2	MCF-7	breast:
10	chr9:118357640..118358284-chr9:119334212..119334746,2	MCF-7	breast:
11	chr9:117776404..117777930-chr9:118286444..118287425,4	MCF-7	breast:
12	chr9:117443932..117444479-chr9:118286459..118287036,2	MCF-7	breast:
13	chr9:117988130..117988677-chr9:118286316..118287411,4	MCF-7	breast:
14	chr9:118382226..118384987-chr9:118388339..118391664,3	MCF-7	breast:
15	chr9:118313061..118314706-chr9:118831781..118833432,2	MCF-7	breast:
16	chr9:118296994..118298706-chr9:118305730..118308270,2	K562	blood:
17	chr9:118355620..118356478-chr9:119334134..119334708,4	MCF-7	breast:
18	chr9:118355882..118356453-chr9:119409217..119410111,2	MCF-7	breast:
19	chr9:118346081..118348622-chr9:118350631..118353525,2	MCF-7	breast:
20	chr9:118364883..118366528-chr9:118368229..118369775,2	K562	blood:
21	chr9:118332824..118334769-chr9:118337363..118339867,2	K562	blood:
22	chr9:118355052..118356699-chr9:119256698..119257676,4	MCF-7	breast:

(count:26 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DEC1-3	chr9:118426662-118426755	XLOC_007531
2	lnc-DEC1-6	chr9:118284992-118285098	NONHSAT134413
3	lnc-DEC1-1	chr9:118349637-118349782	ucscGeneNc_uc004bju_1
4	lnc-DEC1-2	chr9:118365137-118365964	XLOC_007530
5	lnc-DEC1-1	chr9:118348052-118348240	ucscGeneNc_uc004bju_1
6	lnc-DEC1-1	chr9:118342540-118342839	ucscGeneNc_uc004bju_1
7	lnc-TNC-5	chr9:118442185-118442248	NONHSAT134420
8	lnc-DEC1-1	chr9:118347849-118347927	ucscGeneNc_uc004bju_1
9	lnc-DEC1-1	chr9:118306383-118306444	ucscGeneNc_uc004bju_1
10	lnc-DEC1-1	chr9:118345773-118345941	ucscGeneNc_uc004bju_1
11	lnc-DEC1-2	chr9:118358893-118359024	XLOC_007530
12	lnc-DEC1-1	chr9:118364099-118364393	ucscGeneNc_uc004bju_1
13	lnc-DEC1-2	chr9:118359308-118359388	XLOC_007530
14	lnc-DEC1-3	chr9:118427115-118427216	XLOC_007531
15	lnc-DEC1-3	chr9:118427882-118427944	XLOC_007531
16	lnc-DEC1-1	chr9:118348649-118348799	ucscGeneNc_uc004bju_1
17	lnc-DEC1-1	chr9:118349414-118349534	ucscGeneNc_uc004bju_1
18	lnc-DEC1-1	chr9:118359707-118359750	ucscGeneNc_uc004bju_1
19	lnc-DEC1-3	chr9:118427115-118427216	XLOC_007531
20	lnc-TNC-3	chr9:118369851-118370463	XLOC_007835
21	lnc-DEC1-1	chr9:118352079-118353358	ENSG00000197486
22	lnc-DEC1-3	chr9:118427115-118427221	NONHSAT134416
23	lnc-DEC1-3	chr9:118426662-118426755	XLOC_007531
24	lnc-DEC1-3	chr9:118426646-118426755	NONHSAT134416
25	lnc-DEC1-1	chr9:118354210-118354302	ucscGeneNc_uc004bju_1
26	lnc-DEC1-1	chr9:118353087-118353193	ucscGeneNc_uc004bju_1

No data

Variant related genes	Relation type
ELOVL5	miRNA target sites

Extended variants
information (count: 4882 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:4882 , 50 per page) page: 1 2 3 4 5 6 7 ... 98

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73516416	chr9:118284275-118284276	Strong transcription Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs186103814	chr9:118284281-118284282	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs568054350	chr9:118284294-118284295	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs112182465	chr9:118284334-118284335	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs4626681	chr9:118284335-118284336	Strong transcription Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs555254929	chr9:118284358-118284359	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs11311200	chr9:118284394-118284395	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs4551440	chr9:118284488-118284489	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs547069826	chr9:118284516-118284517	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs966608	chr9:118284519-118284520	Strong transcription Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs373042216	chr9:118284538-118284539	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs1989770	chr9:118284556-118284557	Strong transcription Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs190934407	chr9:118284618-118284619	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs569635652	chr9:118284644-118284645	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs966609	chr9:118284645-118284646	Strong transcription Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs555175838	chr9:118284729-118284730	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs149146100	chr9:118284768-118284769	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs577292512	chr9:118284783-118284784	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs540765743	chr9:118284788-118284789	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs553974691	chr9:118284815-118284816	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs62576663	chr9:118284833-118284834	Strong transcription Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs182833681	chr9:118284859-118284860	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs545896567	chr9:118284867-118284868	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs56288037	chr9:118284875-118284876	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs563150451	chr9:118284886-118284887	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs532074132	chr9:118284887-118284888	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs542428076	chr9:118284898-118284899	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs562310992	chr9:118284899-118284900	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs187314271	chr9:118284911-118284912	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs547422612	chr9:118284931-118284932	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs556187145	chr9:118284988-118284989	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs570469521	chr9:118285043-118285044	Strong transcription Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs532913480	chr9:118285101-118285102	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190821236	chr9:118285117-118285118	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs75778397	chr9:118285183-118285184	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs11461438	chr9:118285184-118285185	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs113929685	chr9:118285185-118285186	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs397699601	chr9:118285192-118285193	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs201308991	chr9:118285193-118285194	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs569598671	chr9:118285196-118285197	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs535399037	chr9:118285225-118285226	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs555137183	chr9:118285237-118285238	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs565488036	chr9:118285264-118285265	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs534523539	chr9:118285266-118285267	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs554207160	chr9:118285269-118285270	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs577290590	chr9:118285305-118285306	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs539801843	chr9:118285307-118285308	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs556630381	chr9:118285401-118285402	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs6478180	chr9:118285411-118285412	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs373523813	chr9:118285420-118285421	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	21509527	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Schizophrenia	18940311	CNVD
Neuroticism	17667963	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Neurodevelopmental disorder	0	CNVD
Intellectual disability	21811512	CNVD
Schizophrenia	20838587	CNVD
Breast cancer	22522925	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1160 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118276600-118286600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:118277000-118292400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:118277200-118286600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:118277200-118286600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:118278200-118285400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:118279600-118286600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:118279600-118286600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:118280800-118286600	Weak transcription	Fetal Stomach	stomach
9	chr9:118281000-118286400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:118281000-118286400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:118281000-118286400	Weak transcription	Osteobl	bone
12	chr9:118281200-118286000	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr9:118281600-118286600	Weak transcription	NHDF-Ad	bronchial
14	chr9:118282200-118285200	Weak transcription	Fetal Lung	lung
15	chr9:118282800-118286800	Enhancers	Fetal Muscle Leg	muscle
16	chr9:118283200-118286600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:118283200-118286600	Weak transcription	Aorta	Aorta
18	chr9:118283200-118291200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:118283600-118286600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:118283800-118284400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:118283800-118284400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:118283800-118286400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:118284000-118286400	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:118284000-118286400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:118284400-118284800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:118284400-118288000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr9:118284600-118286400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:118284800-118285000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:118284800-118285800	Enhancers	HSMM	muscle
30	chr9:118285000-118285200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:118285200-118285400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:118285200-118289200	Enhancers	Fetal Lung	lung
33	chr9:118285400-118286000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:118285400-118314600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr9:118286000-118288400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:118286400-118286600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:118286400-118286600	Enhancers	Stomach Smooth Muscle	stomach
38	chr9:118286400-118286600	Enhancers	Osteobl	bone
39	chr9:118286400-118286800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr9:118286400-118286800	Enhancers	Fetal Kidney	kidney
41	chr9:118286400-118287200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:118286400-118288000	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr9:118286400-118288400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:118286400-118288400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:118286400-118288400	Enhancers	Rectal Smooth Muscle	rectum
46	chr9:118286400-118289200	Enhancers	Colon Smooth Muscle	Colon
47	chr9:118286400-118289200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr9:118286600-118286800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:118286600-118286800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
50	chr9:118286600-118286800	Genic enhancers	HUES64 Cell Line	embryonic stem cell

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