Variant report

Variant	nsv831835
Chromosome Location	chr10:38958781-39076211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:472)
CpG islands
(count:428)
Chromatin interactive
region (count:1)
LncRNA
region (count:49)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:472 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr10:39026887-39027079	GM12878	blood:	n/a	n/a
2	BATF	chr10:39012008-39012251	GM12878	blood:	n/a	n/a
3	BATF	chr10:39056264-39056575	GM12878	blood:	n/a	chr10:39056419-39056430
4	BATF	chr10:39011913-39012229	GM12878	blood:	n/a	n/a
5	BATF	chr10:39069131-39069332	GM12878	blood:	n/a	n/a
6	BATF	chr10:39066194-39066341	GM12878	blood:	n/a	n/a
7	BCL11A	chr10:39070088-39070283	GM12878	blood:	n/a	n/a
8	BCL11A	chr10:39055155-39055331	GM12878	blood:	n/a	n/a
9	BCL11A	chr10:39057780-39057946	GM12878	blood:	n/a	n/a
10	BCL11A	chr10:39066172-39066370	GM12878	blood:	n/a	n/a
11	BCL11A	chr10:39066112-39066389	GM12878	blood:	n/a	n/a
12	BCL11A	chr10:39071173-39071414	GM12878	blood:	n/a	n/a
13	BHLHE40	chr10:39067039-39067285	HepG2	liver:	n/a	n/a
14	CEBPB	chr10:39037900-39037952	A549	lung:	n/a	n/a
15	CTCF	chr10:39076160-39076310	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr10:39075970-39076251	A549	lung:	n/a	n/a
17	CTCF	chr10:39076105-39076197	Lung_OC	lung:	n/a	n/a
18	CTCF	chr10:39070740-39070890	HVMF	connective:	n/a	chr10:39070805-39070823 chr10:39070800-39070821
19	CTCF	chr10:39076100-39076250	HFF	foreskin:	n/a	n/a
20	CTCF	chr10:39075789-39076389	A549	lung:	n/a	n/a
21	CTCF	chr10:39076080-39076230	K562	blood:	n/a	n/a
22	CTCF	chr10:39070760-39070910	BJ	skin:	n/a	chr10:39070805-39070823 chr10:39070800-39070821
23	CTCF	chr10:39076129-39076278	MCF-7	breast:	n/a	n/a
24	CTCF	chr10:39070806-39070856	Spleen_OC	spleen:	n/a	n/a
25	CTCF	chr10:39076140-39076290	Caco-2	colon:	n/a	n/a
26	CTCF	chr10:39076200-39076350	HA-sp	spinal cord:	n/a	n/a
27	CTCF	chr10:39070694-39070843	K562	blood:	n/a	chr10:39070805-39070823 chr10:39070800-39070821
28	CTCF	chr10:39075842-39075880	Pancreas_OC	pancreas:	n/a	n/a
29	CTCF	chr10:39075944-39076327	A549	lung:	n/a	n/a
30	CTCF	chr10:39076140-39076290	HCFaa	heart:	n/a	n/a
31	CTCF	chr10:39076137-39076197	GM10248	blood:	n/a	n/a
32	CTCF	chr10:39076140-39076290	GM12865	blood:	n/a	n/a
33	CTCF	chr10:39076080-39076230	HCPEpiC	choroid plexus:	n/a	n/a
34	CTCF	chr10:39075506-39075608	GM20000	blood:	n/a	n/a
35	CTCF	chr10:39076117-39076229	Kidney_OC	kidney:	n/a	n/a
36	CTCF	chr10:39070578-39071034	A549	lung:	n/a	chr10:39070805-39070823 chr10:39070800-39070821
37	CTCF	chr10:39076140-39076290	GM12874	blood:	n/a	n/a
38	CTCF	chr10:39076100-39076250	HUVEC	blood vessel:	n/a	n/a
39	CTCF	chr10:39076120-39076270	AG04450	lung:	n/a	n/a
40	CTCF	chr10:39076100-39076250	HPF	lung:	n/a	n/a
41	CTCF	chr10:39076076-39076284	K562	blood:	n/a	n/a
42	CTCF	chr10:39070749-39070883	K562	blood:	n/a	chr10:39070805-39070823 chr10:39070800-39070821
43	CTCF	chr10:39076140-39076290	GM12864	blood:	n/a	n/a
44	CTCF	chr10:39062460-39062511	GM10248	blood:	n/a	n/a
45	CTCF	chr10:39076140-39076290	HMF	breast:	n/a	n/a
46	CTCF	chr10:39076120-39076270	HMF	breast:	n/a	n/a
47	CTCF	chr10:39003073-39003149	GM13977	blood:	n/a	n/a
48	CTCF	chr10:39038829-39038908	LNCaP	prostate:	n/a	n/a
49	CTCF	chr10:39076124-39076225	HepG2	liver:	n/a	n/a
50	CTCF	chr10:39076160-39076310	BE2_C	brain:	n/a	n/a

(count:428 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:39023095-39023145	GM12892	blood:	n/a
2	chr10:39023095-39023145	GM12892	blood:	n/a
3	chr10:39023045-39023095	NH-A	brain:	n/a
4	chr10:39023045-39023095	HAEpiC	amniotic membrane:	n/a
5	chr10:39020983-39021033	GM19239	blood:	n/a
6	chr10:39020983-39021033	IMR90	lung:	fetal
7	chr10:39020983-39021033	HUVEC	blood vessel:	n/a
8	chr10:39023768-39023818	CMK	blood:	n/a
9	chr10:39023095-39023145	T-47D	breast:	n/a
10	chr10:39023768-39023818	MCF10A-Er-Src	breast:	n/a
11	chr10:39024195-39024245	NHBE	bronchial:	n/a
12	chr10:39023095-39023145	HPAEpiC	pulmonary alveolar:	n/a
13	chr10:39023768-39023818	LNCaP	prostate:	n/a
14	chr10:39024195-39024245	MCF10A-Er-Src	breast:	n/a
15	chr10:39024195-39024245	LNCaP	prostate:	n/a
16	chr10:39023045-39023095	SAEC	small airway:	n/a
17	chr10:39020983-39021033	AG10803	skin:	n/a
18	chr10:39023676-39023726	U87	brain:	n/a
19	chr10:39023095-39023145	AG10803	skin:	n/a
20	chr10:39020983-39021033	AoSMC	blood vessel:	n/a
21	chr10:39023676-39023726	H1-hESC	embryonic stem cell:	embryo
22	chr10:39023676-39023726	Hepatocyte	liver:	n/a
23	chr10:39023095-39023145	NB4	blood:	n/a
24	chr10:39020983-39021033	AG09309	skin:	n/a
25	chr10:39023095-39023145	HAEpiC	amniotic membrane:	n/a
26	chr10:39024195-39024245	AG10803	skin:	n/a
27	chr10:39023676-39023726	HL-60	blood:	n/a
28	chr10:39020983-39021033	SK-N-SH	brain:	n/a
29	chr10:39023768-39023818	HUVEC	blood vessel:	n/a
30	chr10:39024195-39024245	NT2-D1	testis:	n/a
31	chr10:39023045-39023095	GM12878	blood:	n/a
32	chr10:39023768-39023818	SKMC	muscle:	n/a
33	chr10:39020983-39021033	MCF-7	breast:	n/a
34	chr10:39020983-39021033	HEEpiC	esophagus:	n/a
35	chr10:39023676-39023726	HPAEpiC	pulmonary alveolar:	n/a
36	chr10:39023045-39023095	LNCaP	prostate:	n/a
37	chr10:39024087-39024137	AG09319	gingival:	n/a
38	chr10:39020983-39021033	AG04450	lung:	fetal
39	chr10:39023676-39023726	LNCaP	prostate:	n/a
40	chr10:39023676-39023726	HRCEpiC	kidney:	n/a
41	chr10:39024195-39024245	HRCEpiC	kidney:	n/a
42	chr10:39023676-39023726	SK-N-SH_RA	brain:	n/a
43	chr10:39023768-39023818	H1-hESC	embryonic stem cell:	embryo
44	chr10:39023045-39023095	Jurkat	blood:	n/a
45	chr10:39023768-39023818	MCF-7	breast:	n/a
46	chr10:39023768-39023818	HPAEpiC	pulmonary alveolar:	n/a
47	chr10:39023768-39023818	AG04450	lung:	fetal
48	chr10:39024195-39024245	HRE	kidney:	n/a
49	chr10:39023768-39023818	SAEC	small airway:	n/a
50	chr10:39024195-39024245	IMR90	lung:	fetal

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38965666..38966167-chr6:29670107..29670640,2	MCF-7	breast:

(count:49 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-17	chr10:38989727-38991371	NR_045000
2	lnc-SEPT7L-2	chr10:38983372-38983521	NONHSAT012838
3	lnc-SEPT7L-2	chr10:38973919-38974323	NONHSAT012836
4	lnc-SEPT7L-2	chr10:38984365-38984470	NONHSAT012836
5	lnc-SEPT7L-2	chr10:38979450-38979558	NONHSAT012837
6	lnc-SEPT7L-2	chr10:38965036-38965210	NONHSAT012835
7	lnc-SEPT7L-2	chr10:38974088-38974323	NONHSAT012837
8	lnc-SEPT7L-2	chr10:39022035-39022206	NONHSAT012836
9	lnc-ZNF37A-5	chr10:39010984-39011260	ENSG00000234541
10	lnc-ZNF37A-18	chr10:39052289-39052613	NONHSAT012840
11	lnc-SEPT7L-2	chr10:39019400-39019542	NONHSAT012838
12	lnc-SEPT7L-2	chr10:39017958-39018085	NONHSAT012838
13	lnc-ZNF37A-18	chr10:39046332-39046418	NONHSAT012840
14	lnc-SEPT7L-6	chr10:39055226-39055622	NONHSAT012842
15	lnc-ZNF37A-18	chr10:39051186-39051266	NONHSAT012840
16	lnc-SEPT7L-2	chr10:38965036-38965210	ENSG00000233867
17	lnc-ZNF37A-5	chr10:39011180-39011260	ENSG00000234541
18	lnc-SEPT7L-2	chr10:38977952-38978079	ENSG00000233867
19	lnc-SEPT7L-2	chr10:38984365-38984470	NONHSAT012838
20	lnc-SEPT7L-2	chr10:38979450-38979558	NONHSAT012836
21	lnc-SEPT7L-2	chr10:38978430-38978565	NONHSAT012836
22	lnc-SEPT7L-2	chr10:38977952-38978079	ENSG00000233867
23	lnc-ZNF37A-5	chr10:39006326-39006412	ENSG00000234541
24	lnc-SEPT7L-2	chr10:38983372-38983521	NONHSAT012836
25	lnc-ZNF37A-18	chr10:39052289-39052513	NONHSAT012841
26	lnc-SEPT7L-2	chr10:39005042-39005216	NONHSAT012838
27	lnc-SEPT7L-2	chr10:38978430-38978565	NONHSAT012838
28	lnc-SEPT7L-2	chr10:38979394-38979536	NONHSAT012835
29	lnc-SEPT7L-2	chr10:38979450-38979558	NONHSAT012838
30	lnc-SEPT7L-2	chr10:38982029-38982199	NONHSAT012835
31	lnc-ZNF37A-18	chr10:39050990-39051266	NONHSAT012841
32	lnc-SEPT7L-2	chr10:39005042-39005216	NONHSAT012836
33	lnc-ZNF37A-5	chr10:39011180-39011260	NONHSAT012839
34	lnc-SEPT7L-2	chr10:38984942-38985062	NONHSAT012838
35	lnc-SEPT7L-2	chr10:38977952-38978079	NONHSAT012835
36	lnc-ZNF37A-5	chr10:39012283-39012607	ENSG00000234541
37	lnc-SEPT7L-2	chr10:38982029-38982200	ENSG00000233867
38	lnc-ZNF37A-5	chr10:39012283-39012360	NONHSAT012839
39	lnc-ZNF37A-5	chr10:39006326-39006412	NONHSAT012839
40	lnc-SEPT7L-2	chr10:38979394-38979536	ENSG00000233867
41	lnc-SEPT7L-2	chr10:39017958-39018085	NONHSAT012836
42	lnc-SEPT7L-2	chr10:39022035-39022206	NONHSAT012838
43	lnc-SEPT7L-2	chr10:38977632-38977730	NONHSAT012838
44	lnc-SEPT7L-2	chr10:38979394-38979536	ENSG00000233867
45	lnc-SEPT7L-2	chr10:38982029-38982200	ENSG00000233867
46	lnc-SEPT7L-2	chr10:38965036-38965210	ENSG00000233867
47	lnc-SEPT7L-2	chr10:39019400-39019542	NONHSAT012836
48	lnc-ZNF37A-5	chr10:39012283-39012507	ENSG00000234541
49	lnc-SEPT7L-2	chr10:38983372-38983415	NONHSAT012837

No data

Variant related genes	Relation type
ENSG00000233832	TF binding region
CHEK2P5	TF binding region
ENSG00000227679	TF binding region
ACTR3BP5	TF binding region
SLC9B1P3	TF binding region
ENSG00000233832	CpG island
CHEK2P5	CpG island
ENSG00000227679	CpG island
ACTR3BP5	CpG island
SLC9B1P3	CpG island

Extended variants
information (count: 1660 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:1660 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530185003	chr10:38965037-38965038	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs115144286	chr10:38965038-38965039	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs570160696	chr10:38965040-38965041	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs61840790	chr10:38965041-38965042	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs532194507	chr10:38965061-38965062	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs11146907	chr10:38965080-38965081	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs71010455	chr10:38965115-38965116	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs552389453	chr10:38965117-38965118	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs565834627	chr10:38965118-38965119	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs71500442	chr10:38965121-38965122	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs12765684	chr10:38965132-38965133	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs186535400	chr10:38965137-38965138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs11146908	chr10:38965144-38965145	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs556620888	chr10:38965161-38965162	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs576910645	chr10:38965163-38965164	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs4088448	chr10:38965166-38965167	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs545266162	chr10:38965167-38965168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs74137031	chr10:38965174-38965175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs572614064	chr10:38965196-38965197	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs541764054	chr10:38965207-38965208	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs542806287	chr10:38968807-38968808	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs182893066	chr10:38968808-38968809	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs371317141	chr10:38968809-38968810	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs576623878	chr10:38968811-38968812	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs545703843	chr10:38968814-38968815	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs565603815	chr10:38968839-38968840	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs527668421	chr10:38968848-38968849	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs541479639	chr10:38968852-38968853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs141771558	chr10:38968855-38968856	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs187531616	chr10:38968864-38968865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs113707899	chr10:38968872-38968873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs549671970	chr10:38968874-38968875	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs190833157	chr10:38968887-38968888	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs372476519	chr10:38968896-38968897	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs532278423	chr10:38968907-38968908	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs552033126	chr10:38968909-38968910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs183346024	chr10:38968930-38968931	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs375849276	chr10:38968939-38968940	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs547784441	chr10:38968971-38968972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs2034873	chr10:38968973-38968974	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
41	rs537164913	chr10:38968980-38968981	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs573686449	chr10:38973926-38973927	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs200696175	chr10:38973936-38973937	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs202015933	chr10:38973947-38973948	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs370621652	chr10:38973951-38973952	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs369813529	chr10:38973957-38973958	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs4070237	chr10:38973963-38973964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs372884449	chr10:38973967-38973968	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs7914116	chr10:38973977-38973978	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
50	rs4070236	chr10:38973980-38973981	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38968800-38969000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:39023200-39024000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:39029800-39031600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:39029800-39033800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:39034400-39035800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:39034400-39036000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:39034600-39036000	ZNF genes & repeats	Pancreas	Pancrea
8	chr10:39074800-39075000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
9	chr10:39075000-39076400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:39075000-39076600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links